NC_050943.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050943.1 Clinopodium chinense chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151989
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6150--6176 12 2.2 12 100 0 54 37 14 0 48 1.45
8282--8306 13 1.9 13 100 0 50 0 28 0 72 0.86
15300--15336 19 1.9 19 88 0 56 37 16 5 40 1.71
39685--39713 15 1.9 15 100 0 58 17 34 34 13 1.89
41551--41613 23 3.0 21 73 17 60 47 0 6 46 1.28
58446--58477 16 2.0 16 93 0 55 25 21 15 37 1.93
58691--58730 20 2.0 20 100 0 80 30 20 0 50 1.49
58774--58816 17 2.6 16 81 3 50 51 9 2 37 1.47
62672--62704 17 1.9 17 100 0 66 27 30 12 30 1.92
69183--69218 15 2.4 15 95 0 63 30 0 0 69 0.89
82910--82942 16 2.1 16 100 0 66 30 0 18 51 1.46
87961--88015 24 2.5 22 85 8 67 14 23 12 49 1.78
87983--88050 21 3.2 21 77 8 75 11 22 10 55 1.65
90358--90429 18 4.2 18 92 5 114 31 6 25 36 1.82
90370--90428 9 6.6 9 74 0 55 32 8 27 32 1.87
98153--98202 11 4.5 11 82 12 59 34 2 16 48 1.57
106152--106212 31 2.0 31 93 0 104 40 21 9 27 1.85
121867--121927 22 2.9 21 78 9 63 52 0 14 32 1.42
125090--125137 14 3.6 14 80 5 55 0 14 6 79 0.92
125083--125125 14 3.1 14 83 3 52 0 18 2 79 0.85
125083--125137 27 2.1 26 83 10 67 0 16 5 78 0.93
128967--129027 31 2.0 31 93 0 104 27 9 21 40 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
137008--137053 23 2.0 23 86 0 65 60 6 6 26 1.46
144750--144821 18 4.2 18 92 5 114 36 25 6 31 1.82
144763--144808 9 5.1 9 78 0 56 34 28 4 32 1.77
147147--147200 21 2.6 21 82 11 74 59 11 20 9 1.59
147129--147218 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!