NC_050949.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050949.1 Phellodendron chinense chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158537
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4779--4812 17 2.0 18 88 11 54 70 0 5 23 1.09
9491--9522 15 2.1 15 94 0 55 37 0 3 59 1.13
15052--15093 22 1.9 22 85 0 57 35 14 9 40 1.78
30001--30038 19 2.0 19 90 10 60 21 10 15 52 1.72
30321--30361 17 2.4 17 88 8 57 36 12 4 46 1.63
30330--30364 17 2.1 17 100 0 70 34 17 5 42 1.73
31373--31402 15 2.0 15 100 0 60 20 20 13 46 1.83
38794--38836 21 2.0 21 82 8 52 55 2 2 39 1.25
38783--38851 36 1.9 36 82 5 86 55 2 1 40 1.24
38830--38869 19 2.1 19 100 0 80 65 0 0 35 0.93
45118--45151 16 2.1 16 88 0 50 64 5 5 23 1.38
53215--53250 14 2.6 15 87 12 51 30 19 11 38 1.86
53261--53299 16 2.4 16 95 0 69 41 2 5 51 1.38
58618--58657 19 2.1 19 100 0 80 22 5 15 57 1.57
61314--61362 25 2.0 24 84 4 62 40 12 4 42 1.61
65915--65962 21 2.3 21 96 0 87 45 14 16 22 1.84
69140--69168 14 2.1 14 100 0 58 6 27 0 65 1.18
69939--69974 17 2.1 17 100 0 72 47 5 11 36 1.63
70362--70431 35 2.0 35 100 0 140 48 8 2 40 1.49
70418--70455 18 2.1 19 85 5 51 65 7 5 21 1.38
70534--70572 21 1.9 21 89 5 62 33 25 10 30 1.89
83171--83196 13 2.0 13 100 0 52 23 23 15 38 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
85265--85291 13 2.1 13 100 0 54 25 14 29 29 1.95
87418--87463 23 2.0 23 100 0 92 47 17 8 26 1.76
94014--94067 18 3.0 18 97 0 99 29 9 27 33 1.88
101806--101842 12 3.2 12 85 14 51 8 5 0 86 0.70
102338--102375 18 2.1 18 95 0 67 21 10 7 60 1.54
110485--110546 32 1.9 32 96 0 115 38 24 9 27 1.86
113259--113307 24 2.0 24 100 0 98 55 4 16 24 1.59
113247--113282 17 2.1 17 100 0 72 50 5 22 22 1.70
116622--116669 23 2.1 23 100 0 96 50 8 4 37 1.52
134242--134303 32 1.9 32 96 0 115 27 9 24 38 1.86
142413--142450 18 2.1 18 95 0 67 60 7 10 21 1.54
142946--142982 12 3.2 12 85 14 51 86 0 5 8 0.70
150721--150774 18 3.0 18 97 0 99 33 27 9 29 1.88
157325--157370 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!