NC_050951.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_050951.1 Canavalia gladiata chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 157923 Tables: 1 2 This is table 1 of 2 ( 122 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 2998--3038 20 2.0 20 95 0 73 58 7 9 24 1.55 5499--5551 10 4.8 11 81 9 56 33 0 0 66 0.92 5499--5551 24 2.1 24 83 13 63 33 0 0 66 0.92 5549--5607 13 4.6 13 80 15 70 62 0 0 37 0.95 5522--5558 20 1.9 20 88 5 58 43 0 0 56 0.99 5551--5613 30 2.1 30 85 5 83 65 0 0 34 0.93 5544--5613 26 2.7 26 82 10 90 61 0 0 38 0.96 5547--5615 14 5.3 13 74 22 56 60 0 0 39 0.97 5648--5722 6 12.8 6 70 16 50 54 0 0 45 0.99 5652--5696 12 4.0 11 80 13 56 64 0 0 35 0.94 5642--5714 9 8.1 10 74 18 63 56 0 0 43 0.99 6074--6185 7 17.1 7 73 23 84 57 0 0 42 0.99 6076--6152 12 6.3 12 74 14 68 53 0 0 46 1.00 6084--6188 10 11.1 10 75 16 55 57 0 0 42 0.99 6091--6262 3 53.3 3 67 24 50 56 1 2 38 1.22 6162--6205 23 2.0 22 86 4 61 63 4 0 31 1.14 6175--6216 18 2.3 19 91 4 68 61 7 2 28 1.35 6074--6267 19 10.4 18 76 14 107 56 1 2 39 1.22 6195--6268 16 4.3 17 74 16 55 55 1 8 35 1.38 6345--6372 14 2.0 14 100 0 56 35 7 7 50 1.57 11620--11647 13 2.2 13 100 0 56 53 0 7 39 1.28 15611--15656 23 2.0 23 100 0 92 43 0 13 43 1.43 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 15682--15727 11 4.3 11 83 8 51 56 0 0 43 0.99 15930--16066 2 74.0 2 72 24 88 44 0 2 52 1.16 15981--16073 9 11.0 9 74 21 76 49 0 2 48 1.13 15916--16059 53 2.8 52 91 6 229 40 0 2 56 1.14 15982--16073 23 4.1 23 75 19 79 50 0 2 47 1.13 15930--16066 15 9.8 14 73 18 83 44 0 2 52 1.16 15981--16067 11 7.6 11 76 13 79 48 0 2 49 1.13 15982--16070 25 3.3 26 73 7 72 49 0 2 48 1.13 16064--16120 28 2.0 28 100 0 114 68 0 10 21 1.19 16706--16741 18 2.0 18 100 0 72 66 5 11 16 1.40 20048--20140 28 3.1 28 68 19 78 32 4 6 56 1.44 25677--25725 23 2.1 23 100 0 98 26 12 8 53 1.66 26094--26143 15 3.0 15 75 25 55 44 8 0 48 1.32 26094--26168 35 2.2 32 86 11 98 44 5 0 50 1.24 26096--26200 20 5.7 19 76 16 82 46 2 0 50 1.16 26119--26249 17 8.1 15 71 20 54 48 0 0 51 1.06 26138--26240 13 7.8 12 75 18 57 48 0 0 51 1.00 26156--26255 22 4.6 22 73 20 63 49 0 0 51 1.00 26198--26253 17 3.2 17 85 12 69 48 0 0 51 1.00 26175--26253 17 4.2 20 70 29 59 49 0 0 50 1.00 26096--26255 19 8.1 19 70 26 95 47 1 0 50 1.11 26118--26248 15 9.0 15 69 23 77 48 0 0 50 1.06 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 26170--26280 7 15.9 7 69 24 58 50 0 1 47 1.11 26200--26277 22 3.7 21 75 19 65 48 0 2 48 1.15 34200--34254 7 8.0 7 82 9 69 47 0 0 52 1.00 34200--34258 14 4.1 14 87 10 84 49 0 0 50 1.00 34200--34255 2 31.0 2 80 20 70 48 0 0 51 1.00 34371--34414 19 2.4 19 84 3 54 40 0 0 59 0.98 35401--35425 13 1.9 13 100 0 50 12 64 0 24 1.27 37019--37067 25 2.0 25 83 0 62 51 0 0 48 1.00 39011--39082 24 3.0 24 95 0 126 22 36 6 34 1.81 40417--40465 24 2.0 24 100 0 98 32 0 4 63 1.13 40417--40474 24 2.4 24 91 5 82 36 0 3 60 1.14 40635--40751 2 66.0 2 67 28 52 42 0 2 53 1.20 40692--40753 17 3.5 17 80 10 72 43 0 0 56 0.99 40696--40754 14 4.5 13 78 22 61 42 0 0 57 0.98 40746--40784 19 2.1 19 85 9 53 51 0 0 48 1.00 40692--40784 17 4.8 19 72 23 63 46 0 0 53 1.00 54283--54335 17 3.1 17 86 7 72 43 11 0 45 1.40 54283--54334 9 6.0 9 82 8 72 42 11 0 46 1.40 54283--54334 26 2.0 26 100 0 104 42 11 0 46 1.40 54286--54353 26 2.6 26 86 9 77 48 7 0 44 1.30 58264--58298 12 2.9 12 86 0 52 31 8 17 42 1.79 58415--58439 12 2.1 12 100 0 50 36 8 8 48 1.62 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 59578--59642 17 3.8 17 76 9 62 29 1 6 63 1.28 60591--60742 79 1.9 79 87 2 225 33 16 17 32 1.93 63094--63164 2 38.5 2 77 16 73 59 0 0 40 0.98 63081--63172 28 3.4 24 72 21 76 64 0 0 35 0.94 63081--63167 36 2.5 35 87 10 117 62 0 0 37 0.96 66270--66297 10 2.8 10 100 0 56 53 0 0 46 1.00 66274--66322 19 2.8 18 81 12 66 51 0 0 48 1.00 66333--66369 20 2.0 19 85 15 51 54 0 8 37 1.30 66404--66447 22 2.0 23 86 4 63 63 2 0 34 1.07 66400--66460 27 2.3 27 83 5 72 63 4 3 27 1.30 67475--67504 15 2.0 15 100 0 60 33 13 0 53 1.40 67503--67541 2 19.5 2 84 10 53 51 0 2 46 1.14 67503--67541 15 2.7 15 92 4 62 51 0 2 46 1.14 67503--67533 13 2.5 13 94 5 55 54 0 0 45 0.99 69401--69428 13 2.2 13 100 0 56 53 0 7 39 1.28 69488--69527 20 2.0 21 90 5 64 55 2 10 32 1.47 71769--71808 17 2.4 17 95 0 71 22 7 5 65 1.38 78270--78308 20 2.0 20 90 10 62 46 12 0 41 1.42 78278--78303 13 2.0 13 100 0 52 46 15 0 38 1.46 78271--78308 9 3.9 10 83 16 53 44 13 0 42 1.43 79334--79359 12 2.2 12 100 0 52 53 15 7 23 1.67 82698--82806 19 5.6 19 68 15 71 53 0 0 44 1.13 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 83302--83326 12 2.1 12 100 0 50 24 8 8 60 1.52 83284--83349 33 2.0 33 93 0 114 27 6 18 48 1.71 83460--83497 18 2.1 18 90 0 58 52 5 13 28 1.61 88455--88532 24 3.4 24 75 22 94 12 21 10 55 1.67 88455--88546 45 2.1 45 85 6 125 11 23 8 55 1.64 90836--90881 18 2.6 18 92 0 83 34 6 26 32 1.82 98624--98663 20 2.0 20 95 0 71 25 17 5 52 1.64 98659--98684 13 2.0 13 100 0 52 23 7 7 61 1.49 98648--98695 24 2.0 24 83 0 60 25 8 8 58 1.55 107183--107210 14 2.0 14 100 0 56 64 0 14 21 1.29 109905--109942 20 1.9 20 84 10 51 55 23 2 18 1.55 110852--110884 11 3.2 11 87 12 52 57 0 9 33 1.30 111720--111744 13 1.9 13 100 0 50 32 4 0 64 1.12 116102--116130 15 1.9 15 100 0 58 37 0 0 62 0.96 124017--124058 21 2.0 21 90 0 66 40 19 2 38 1.64 124182--124228 23 2.0 24 87 8 69 4 21 4 70 1.22 128374--128401 14 2.0 14 100 0 56 21 14 0 64 1.29 136900--136925 13 2.0 13 100 0 52 61 7 7 23 1.49 136889--136936 24 2.0 24 83 0 60 58 8 8 25 1.55 136921--136960 20 2.0 20 95 0 71 52 5 17 25 1.64 144703--144748 18 2.6 18 92 0 83 32 26 6 34 1.82 147052--147129 24 3.4 24 75 22 94 55 10 21 12 1.67 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 152087--152124 18 2.1 18 90 0 58 28 13 5 52 1.61 152235--152300 33 2.0 33 93 0 114 48 18 6 27 1.71 152258--152282 12 2.1 12 100 0 50 60 8 8 24 1.52 152778--152885 24 4.2 24 68 22 67 45 0 0 52 1.13 152786--152891 26 4.0 26 67 20 67 46 0 0 51 1.13 152778--152891 19 5.9 19 69 18 74 45 0 0 52 1.12 152803--152834 12 2.7 12 95 0 55 46 0 0 53 1.00 152791--152891 41 2.5 42 76 13 106 47 0 0 50 1.14 156225--156250 12 2.2 12 100 0 52 23 7 15 53 1.67 157276--157313 9 3.9 10 83 16 53 42 0 13 44 1.43 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2