NC_051540.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_051540.1 Lepidium apetalum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154680
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4500--4547 24 2.1 24 85 14 66 35 4 2 58 1.29
31023--31051 15 1.9 15 100 0 58 34 13 0 51 1.42
32117--32146 15 2.0 15 100 0 60 53 6 6 33 1.53
47431--47678 83 3.0 83 86 2 356 31 17 26 25 1.97
47854--47889 9 4.0 9 86 13 56 30 13 0 55 1.39
47852--47887 18 2.0 18 100 0 72 27 16 0 55 1.42
58435--58460 13 2.0 13 100 0 52 76 0 15 7 0.99
58572--58624 25 2.1 25 82 6 63 28 5 11 54 1.58
62622--62670 17 2.7 18 79 17 57 38 8 4 48 1.52
64937--64965 15 2.0 15 93 6 51 20 0 6 72 1.07
71624--71657 15 2.3 15 95 5 61 50 5 0 44 1.26
84498--84536 20 2.0 20 89 0 60 33 10 12 43 1.77
88682--88777 24 4.3 22 90 6 124 12 20 11 55 1.68
88704--88795 21 4.2 21 87 4 112 13 21 8 56 1.63
88682--88795 42 2.6 43 83 8 140 13 21 9 55 1.66
91133--91190 18 3.4 17 88 6 75 32 6 22 37 1.81
99374--99408 18 1.9 18 94 0 61 25 8 8 57 1.57
107570--107630 32 1.9 32 96 0 113 40 24 9 24 1.85
112886--112920 15 2.4 15 95 4 63 28 5 17 48 1.69
113090--113132 21 2.0 22 81 4 52 69 9 4 16 1.31
121489--121514 12 2.2 12 100 0 52 23 7 0 69 1.14
130837--130897 32 1.9 32 96 0 113 24 9 24 40 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
139059--139093 18 1.9 18 94 0 61 57 8 8 25 1.57
147277--147322 18 2.6 18 92 0 74 34 23 8 32 1.86
147277--147334 18 3.4 17 88 6 66 37 22 6 32 1.81
149673--149785 24 5.1 21 88 4 102 54 9 22 13 1.67
149673--149765 21 4.3 21 85 8 116 55 8 22 12 1.64
149700--149785 24 3.7 24 92 4 133 53 11 20 13 1.71
153931--153969 20 2.0 20 89 0 60 43 12 10 33 1.77
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Tables: 1
The End!