NC_051541.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_051541.1 Arisaema erubescens chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 167607 Tables: 1 2 3 This is table 1 of 3 ( 280 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 103--131 15 2.0 15 93 6 51 27 6 0 65 1.18 121--169 13 3.8 13 83 8 55 30 10 0 59 1.31 157--317 19 8.9 18 75 15 90 39 0 0 60 1.02 190--317 3 42.3 3 75 18 115 39 0 0 60 0.97 187--317 29 4.6 29 80 17 150 38 0 0 61 0.96 182--321 10 16.0 8 74 15 61 37 0 0 62 0.96 351--387 18 2.0 19 89 5 58 18 2 8 70 1.25 4586--4619 16 2.0 18 88 11 54 64 11 0 23 1.26 5678--5705 14 2.0 14 100 0 56 50 7 7 35 1.57 5709--5750 21 2.0 21 86 4 59 40 2 2 54 1.26 5778--5840 11 6.2 11 71 17 55 58 0 0 41 0.98 5803--5839 18 2.1 18 100 0 74 62 0 0 37 0.96 7422--7458 12 3.1 12 96 0 65 54 5 0 40 1.24 7416--7453 19 2.0 20 89 5 60 50 7 0 42 1.31 7469--7495 13 2.1 13 100 0 54 55 0 14 29 1.40 7427--7510 12 7.1 12 76 12 66 55 1 8 34 1.37 9684--9741 24 2.5 24 83 8 66 32 1 10 55 1.44 9684--9741 8 7.4 8 81 16 59 32 1 10 55 1.44 9701--9750 12 4.1 12 75 19 50 40 2 10 48 1.48 9710--9768 28 2.1 28 87 6 84 38 1 6 52 1.38 9708--9789 16 5.5 15 72 20 66 37 2 6 53 1.39 9951--9978 14 2.0 14 100 0 56 64 7 7 21 1.43 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 10033--10075 11 3.6 11 79 14 50 30 0 0 69 0.88 10031--10079 13 3.8 13 76 15 57 28 0 0 71 0.86 10078--10174 13 7.3 14 81 15 100 44 0 1 54 1.06 10097--10171 23 3.3 23 94 3 127 48 0 0 52 1.00 10097--10227 14 9.3 14 77 14 101 47 0 1 51 1.10 10179--10262 18 5.1 18 75 18 85 45 1 7 46 1.38 10165--10262 32 3.1 32 84 8 112 45 1 6 46 1.34 10120--10243 42 3.1 41 82 9 141 45 0 3 50 1.23 10117--10262 14 9.9 14 76 14 89 47 0 4 47 1.26 10187--10270 16 5.2 16 78 10 73 48 1 7 42 1.38 10150--10383 10 20.3 12 71 19 51 55 0 5 38 1.25 10248--10347 40 2.4 42 83 10 132 65 0 4 31 1.11 10278--10364 40 2.2 40 100 0 174 64 0 4 31 1.14 10294--10364 28 2.6 26 76 8 61 61 0 5 32 1.19 10295--10380 12 8.2 11 72 21 60 58 0 6 34 1.25 10609--10658 15 3.3 15 80 2 55 26 2 2 70 1.09 10796--10907 9 13.3 9 65 28 52 53 1 1 42 1.21 10767--10812 23 2.0 23 91 4 76 45 4 0 50 1.21 10806--10857 27 1.9 26 85 14 70 55 0 0 44 0.99 10870--10915 18 2.6 18 100 0 92 50 6 0 43 1.28 10803--10900 21 4.3 22 77 14 85 54 2 2 41 1.23 10978--11019 17 2.4 17 96 4 75 47 0 9 42 1.36 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 12609--12633 12 2.1 12 100 0 50 16 24 8 52 1.70 15361--15465 7 13.9 7 72 18 68 37 0 0 61 1.02 15361--15494 43 3.2 41 76 21 111 41 0 0 58 1.03 15361--15466 25 4.3 25 73 14 69 36 0 0 62 1.02 15360--15467 15 7.6 15 70 21 81 37 0 0 62 1.02 15422--15479 29 2.0 28 83 6 71 39 0 0 60 0.97 15426--15894 14 34.5 14 73 14 114 53 0 0 45 1.03 15477--15623 10 14.9 10 75 20 100 64 0 0 35 0.94 15477--15624 38 3.6 41 79 18 136 64 0 0 35 0.94 15462--15632 34 4.9 36 74 16 139 61 0 0 38 0.96 15546--15632 25 3.1 27 81 17 90 59 0 0 40 0.97 15590--15722 5 27.6 5 73 14 84 38 0 0 61 0.96 15716--15892 13 14.3 12 69 20 82 61 0 1 37 1.03 15845--15899 23 2.3 23 93 3 92 67 1 0 30 1.01 15745--15893 7 21.4 7 70 15 78 63 0 1 35 1.03 15838--15909 14 5.5 14 72 20 57 68 1 0 30 0.99 15845--15909 23 2.8 23 79 9 71 69 1 0 29 0.98 15723--15959 12 20.5 11 68 21 87 63 0 1 35 1.06 16277--16322 14 3.1 14 81 9 56 30 0 4 65 1.12 17498--17563 6 10.7 6 78 13 55 71 10 0 18 1.14 17509--17570 17 3.4 17 80 17 54 69 8 0 22 1.14 17488--17551 21 3.2 21 84 10 89 73 10 0 15 1.09 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 30257--30297 15 2.7 15 92 0 64 31 9 9 48 1.69 30873--30906 16 2.1 16 100 0 68 47 11 0 41 1.40 30987--31344 12 27.2 13 68 24 136 33 0 0 65 1.01 30998--31335 36 9.6 34 73 16 189 33 0 0 65 1.01 31021--31121 37 2.6 37 81 12 98 37 0 0 61 1.03 31032--31084 14 3.7 14 80 5 61 37 0 0 62 0.96 31005--31411 19 21.6 19 67 22 95 36 0 0 62 1.02 31261--31359 15 6.5 15 72 17 71 37 0 0 62 0.95 31009--31364 43 8.2 45 71 20 189 34 0 0 64 1.02 31104--31299 72 2.8 72 80 14 221 32 1 0 66 1.01 31294--31384 43 2.1 43 87 2 130 45 0 0 54 0.99 31398--31442 23 2.0 23 86 0 63 24 0 4 71 1.05 31398--31458 24 2.6 24 80 12 65 26 0 4 68 1.09 35202--35253 19 2.8 19 97 2 97 44 0 0 55 0.99 35179--35310 25 5.5 25 68 21 79 48 0 1 50 1.10 40112--40142 14 2.2 14 94 0 53 22 16 12 48 1.80 47751--47784 15 2.3 15 90 5 52 14 8 5 70 1.31 47785--47813 14 2.0 15 93 6 51 51 0 0 48 1.00 51092--51177 19 4.3 19 69 19 59 32 1 0 66 1.00 51054--51183 67 1.9 67 82 11 160 32 3 0 63 1.12 51148--51194 8 5.8 8 80 14 60 36 0 0 63 0.94 51142--51203 25 2.5 24 84 5 79 38 0 0 61 0.96 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 51137--51203 17 3.8 18 76 11 68 38 0 0 61 0.96 51129--51187 29 2.0 29 93 0 100 33 0 0 66 0.92 51197--51263 16 4.5 15 76 16 68 59 0 16 23 1.37 51208--51273 14 4.7 13 82 14 69 59 0 16 24 1.37 51319--51370 23 2.5 19 75 21 59 51 0 13 34 1.41 51315--51362 23 2.1 23 100 0 96 52 0 12 35 1.40 51360--51415 14 4.0 13 78 21 60 46 0 1 51 1.11 51360--51415 28 2.0 28 83 13 71 46 0 1 51 1.11 51430--51456 13 2.1 13 100 0 54 14 0 14 70 1.17 51817--51866 23 2.1 24 92 3 84 20 14 4 62 1.47 51830--51874 23 2.0 23 86 8 65 22 13 4 60 1.51 51997--52028 16 2.0 16 100 0 64 43 6 0 50 1.27 52040--52116 18 4.1 18 94 5 127 35 0 1 63 1.03 52040--52116 37 2.1 38 92 7 131 35 0 1 63 1.03 52081--52138 25 2.6 24 82 15 63 43 0 1 55 1.10 52047--52130 32 2.5 34 86 11 111 39 0 0 60 0.97 52047--52128 36 2.3 36 87 8 114 39 0 0 60 0.96 52104--52171 16 4.2 16 83 10 77 52 1 4 41 1.30 52104--52199 12 8.2 12 71 18 53 53 1 5 40 1.30 52298--52380 25 3.1 25 72 21 69 32 2 1 63 1.15 52311--52355 13 3.5 13 84 6 56 40 0 2 57 1.11 52305--52346 18 2.4 17 80 15 50 38 0 0 61 0.96 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 53494--53656 17 10.2 16 74 17 92 44 0 0 55 0.99 53489--53530 22 1.9 23 85 9 61 38 0 0 61 0.96 53552--53650 6 17.0 6 66 24 52 45 0 0 54 0.99 53624--53656 10 3.5 10 84 16 52 57 0 0 42 0.98 53522--53656 18 7.7 18 80 14 149 45 0 0 54 1.00 53522--53648 35 3.7 35 77 16 147 44 0 0 55 0.99 53538--53668 69 1.9 69 85 6 185 46 0 0 52 1.05 54610--54748 11 12.3 11 76 16 124 39 0 0 59 1.02 54631--54755 46 2.8 45 84 6 148 39 0 0 60 1.03 54812--54859 7 7.0 7 79 11 55 56 12 0 31 1.37 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2 3