NC_051971.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_051971.1 Oxalis corniculata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152189
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8--58 21 2.4 20 81 12 57 25 1 0 72 0.95
6--62 26 2.3 24 78 6 60 24 1 0 73 0.92
2083--2174 47 2.0 47 100 0 184 19 18 11 50 1.78
7244--7273 15 2.0 15 100 0 60 26 0 33 40 1.57
8088--8133 18 2.6 18 86 6 58 26 8 0 65 1.21
9738--9784 20 2.3 20 81 3 58 57 0 10 31 1.33
12848--12874 14 1.9 14 100 0 54 59 0 7 33 1.25
13449--13478 13 2.3 13 94 0 51 46 0 13 40 1.43
13608--13656 24 2.0 24 100 0 98 46 8 20 24 1.77
15175--15205 10 3.1 10 100 0 62 38 9 29 22 1.86
27222--27248 13 2.1 13 100 0 54 22 14 7 55 1.64
31388--31417 14 2.1 14 100 0 60 36 6 0 56 1.26
31500--31529 15 2.0 15 93 0 51 70 0 6 23 1.11
32888--32939 11 4.7 11 92 0 77 46 0 0 53 1.00
32886--32932 4 12.5 4 78 13 55 46 0 0 53 1.00
32886--32932 15 3.1 15 81 6 51 46 0 0 53 1.00
37100--37148 14 3.2 15 86 13 73 32 6 6 55 1.49
45371--45397 13 2.1 13 100 0 54 29 48 0 22 1.51
55765--55808 22 2.0 22 100 0 88 27 4 13 54 1.58
57468--57505 19 2.0 19 89 0 58 39 13 21 26 1.89
60280--60345 20 3.0 21 84 13 80 56 10 13 19 1.67
63929--63974 12 4.0 12 88 11 78 50 0 23 26 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63929--63972 22 2.0 22 100 0 88 50 0 22 27 1.50
65424--65469 15 3.2 15 69 12 51 23 2 23 50 1.61
65703--65752 24 2.1 24 100 0 100 46 8 4 42 1.52
66827--66869 15 2.9 14 89 10 59 32 0 0 67 0.91
66826--66869 18 2.4 19 84 3 63 34 0 0 65 0.93
67503--67565 24 2.6 25 80 9 76 28 4 1 65 1.22
68014--68052 21 1.9 21 94 5 71 30 23 10 35 1.88
70255--70326 36 2.0 36 100 0 144 55 11 19 13 1.68
71245--71327 41 2.0 41 100 0 166 38 16 12 32 1.86
76744--76779 18 2.0 18 100 0 72 55 5 16 22 1.62
79394--79442 24 2.0 24 92 0 80 28 28 14 28 1.95
80077--80137 25 2.4 25 100 0 122 19 9 4 65 1.40
81754--81795 13 3.2 13 89 0 66 59 0 0 40 0.97
89197--89264 21 3.2 21 87 0 91 10 23 7 58 1.56
91611--91667 18 3.2 18 92 5 89 35 5 26 33 1.79
91611--91654 9 4.9 9 77 0 52 31 4 27 36 1.77
109584--109616 17 1.9 17 100 0 66 42 27 12 18 1.85
118985--119048 32 2.0 32 100 0 128 34 15 6 43 1.72
123410--123445 15 2.5 15 90 4 56 33 0 13 52 1.41
127000--127032 17 1.9 17 100 0 66 18 12 27 42 1.85
144949--145005 18 3.2 18 92 5 89 33 26 5 35 1.79
144962--145005 9 4.9 9 77 0 52 36 27 4 31 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147353--147421 21 3.3 21 87 2 95 57 7 24 10 1.56
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Tables: 1
The End!