NC_052747.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_052747.1 Euphorbia ebracteolata chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 163090 Tables: 1 2 This is table 1 of 2 ( 139 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 192--234 23 1.9 22 90 4 68 11 6 2 79 1.02 381--410 16 1.9 16 93 6 53 20 10 0 70 1.16 428--471 15 2.9 15 100 0 88 18 13 0 68 1.22 5578--5649 17 3.7 19 72 23 60 62 0 6 30 1.21 5609--5649 17 2.4 17 91 0 73 60 0 9 29 1.28 5578--5662 42 2.0 42 82 8 102 62 0 7 30 1.22 5666--5693 12 2.3 12 100 0 56 42 0 7 50 1.30 5686--5724 19 2.1 19 100 0 78 64 0 10 25 1.25 6506--6559 26 2.1 26 100 0 108 24 29 11 35 1.90 6644--6737 20 4.8 20 85 2 127 42 4 0 53 1.20 6633--6715 39 2.1 39 100 0 166 43 4 0 51 1.23 6654--6737 13 7.1 11 71 24 55 42 3 0 53 1.18 6633--6746 39 3.0 37 88 10 135 42 4 0 52 1.21 6650--6769 20 6.2 20 73 22 89 40 5 0 54 1.22 9185--9247 17 3.6 17 83 14 76 68 1 7 22 1.24 9241--9288 11 4.2 12 79 15 50 64 0 4 31 1.12 9338--9378 20 2.0 20 100 0 82 75 4 9 9 1.17 9559--9598 20 2.0 20 85 0 53 42 15 15 27 1.86 9685--9725 15 2.8 15 85 3 57 34 7 7 51 1.58 9757--9782 13 2.0 13 100 0 52 23 7 7 61 1.49 9843--9918 20 3.7 20 73 15 64 64 0 7 27 1.21 9853--9921 22 3.2 22 79 6 79 60 0 10 28 1.29 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9877--9989 56 2.0 56 100 0 226 55 1 7 35 1.37 9880--10031 56 2.7 56 88 7 186 57 2 5 34 1.35 10916--10949 14 2.5 14 95 4 61 26 5 0 67 1.13 11059--11103 12 3.6 12 85 11 63 66 0 0 33 0.92 11175--11208 15 2.3 15 89 0 50 50 2 0 47 1.16 11657--11706 16 2.9 18 82 11 77 36 4 8 52 1.50 11721--11795 13 6.2 12 76 20 59 21 6 0 72 1.08 11722--11771 13 3.7 13 91 5 73 28 6 0 66 1.15 15968--16003 16 2.3 15 86 9 54 22 0 0 77 0.76 16208--16242 16 2.2 16 89 0 52 45 2 22 28 1.67 17351--17381 16 1.9 16 93 0 53 32 9 0 58 1.31 20969--20997 15 1.9 15 100 0 58 31 6 20 41 1.79 24535--24569 18 1.9 18 100 0 70 34 25 0 40 1.56 29317--29343 14 1.9 14 100 0 54 44 7 3 44 1.49 29481--29530 24 2.1 24 100 0 100 46 4 16 34 1.65 30323--30370 17 2.9 17 90 6 73 50 14 4 31 1.62 30690--30720 13 2.4 13 94 0 53 48 16 0 35 1.46 30937--30974 17 2.2 17 86 9 51 52 0 7 39 1.31 32386--32426 18 2.3 18 95 0 73 56 0 4 39 1.21 32989--33040 15 3.4 15 79 10 52 44 1 5 48 1.38 32973--33040 15 4.5 15 73 8 50 45 2 5 45 1.42 33063--33095 15 2.2 15 100 0 66 33 0 0 66 0.92 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 34257--34293 13 2.8 14 88 8 51 45 8 8 37 1.63 34326--34378 17 3.0 17 81 13 63 45 1 0 52 1.11 34331--34384 17 3.1 16 80 20 56 44 1 0 53 1.11 34661--34708 18 2.6 19 80 3 53 43 6 6 43 1.54 34806--34839 13 2.6 13 95 0 59 44 0 5 50 1.26 34825--34861 19 1.9 19 88 0 56 43 2 8 45 1.47 34856--34897 15 2.9 15 89 6 61 50 9 0 40 1.35 34990--35029 21 1.9 21 85 10 55 32 5 5 57 1.42 35165--35208 13 3.1 14 87 12 56 54 0 13 31 1.39 35181--35216 11 3.1 11 85 14 54 52 0 16 30 1.44 35447--35504 29 2.0 29 96 0 107 29 10 15 44 1.79 35609--35650 21 2.0 21 100 0 84 38 0 4 57 1.20 35777--35807 16 1.9 16 100 0 62 38 12 0 48 1.42 35825--35856 16 2.0 16 100 0 64 50 0 6 43 1.27 39990--40054 9 7.2 9 72 17 55 46 0 1 52 1.10 40004--40060 27 2.1 27 100 0 114 49 0 3 47 1.18 40046--40087 20 2.0 21 90 4 68 45 2 9 42 1.49 40258--40327 19 3.5 19 77 11 86 42 4 7 45 1.51 40251--40332 41 2.0 41 97 0 155 40 4 7 47 1.53 40250--40327 19 3.9 20 75 11 79 42 5 7 44 1.55 40337--40385 16 3.1 16 88 8 73 53 10 0 36 1.35 40533--40564 15 2.1 15 94 0 55 65 0 0 34 0.93 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 40552--40602 18 2.9 17 82 8 57 54 0 9 35 1.33 46888--46946 14 4.4 14 77 16 52 45 1 1 50 1.21 46894--46952 14 4.4 13 77 14 57 42 3 1 52 1.28 46955--47013 23 2.5 23 88 2 91 42 0 0 57 0.98 47004--47074 38 1.9 37 82 5 90 22 5 1 70 1.16 47069--47102 17 2.0 17 100 0 68 47 0 11 41 1.40 47316--47346 15 2.1 15 100 0 62 61 6 12 19 1.53 50822--50853 13 2.5 13 94 0 55 37 15 12 34 1.85 50901--50950 15 3.4 15 70 13 50 54 8 6 32 1.54 50900--50957 28 2.0 29 96 3 109 58 6 6 27 1.50 51304--51346 21 2.0 21 100 0 86 18 9 4 67 1.36 51637--51691 27 2.0 27 96 0 101 56 12 7 23 1.61 51952--51999 16 2.9 16 93 6 78 18 6 0 75 1.01 51994--52019 13 2.0 13 100 0 52 46 7 0 46 1.31 52014--52047 17 2.0 17 100 0 68 58 0 0 41 0.98 53120--53153 17 2.0 17 100 0 68 47 0 17 35 1.48 55459--55503 13 3.2 13 84 15 54 46 0 0 53 1.00 55461--55499 17 2.3 17 100 0 78 46 0 0 53 1.00 55459--55505 15 3.1 16 78 12 62 48 0 0 51 1.00 55613--55646 8 4.4 8 85 7 52 35 8 0 55 1.31 55619--55650 15 2.1 15 100 0 64 34 6 0 59 1.23 55578--55660 12 7.2 12 74 14 59 31 9 1 57 1.38 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 55674--55745 22 3.3 22 98 1 137 41 4 8 45 1.53 55787--55820 11 3.2 11 87 8 52 29 0 0 70 0.87 55788--55820 10 3.2 10 95 4 57 30 0 0 69 0.88 55876--55913 20 1.9 20 88 0 58 10 10 7 71 1.32 56432--56461 14 2.1 14 93 0 51 20 0 0 80 0.72 64697--64763 18 3.9 18 70 22 54 50 2 10 35 1.52 64909--64953 13 3.5 13 87 3 56 66 6 0 26 1.16 67941--68024 33 2.7 30 77 12 87 27 5 1 65 1.23 69674--69705 17 1.9 17 93 6 57 0 9 0 90 0.45 71778--71885 37 3.2 32 72 17 87 35 4 3 56 1.38 71814--71895 20 4.1 20 77 13 62 39 4 2 53 1.35 72006--72067 30 2.2 27 85 8 79 46 4 9 38 1.58 72107--72153 23 2.0 24 84 8 62 53 0 4 42 1.20 72093--72142 23 2.2 23 85 0 64 52 2 2 44 1.24 73492--73536 22 2.0 22 91 0 72 33 11 2 53 1.49 73717--73742 13 2.0 13 100 0 52 38 0 15 46 1.46 73752--73777 12 2.2 12 100 0 52 42 0 7 50 1.31 74699--74738 17 2.4 17 95 0 71 57 0 12 30 1.36 74746--74801 22 2.7 22 78 8 64 41 7 5 46 1.54 74842--74879 20 1.9 20 94 0 67 42 5 7 44 1.56 74867--74914 16 3.3 14 83 16 62 47 6 0 45 1.27 74911--75039 55 2.4 53 77 16 133 68 2 0 28 1.07 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 74951--75008 23 2.7 21 72 5 53 65 1 0 32 1.03 74918--74995 12 6.1 12 69 19 59 71 0 1 26 0.93 74959--74994 11 3.2 11 88 7 54 72 0 0 27 0.85 77804--77836 15 2.2 15 100 0 66 54 6 6 33 1.50 82715--82743 15 1.9 15 100 0 58 55 6 6 31 1.53 84478--84503 13 2.0 13 100 0 52 23 15 0 61 1.33 89508--89537 13 2.3 13 100 0 60 26 6 0 66 1.16 90383--90424 15 2.7 15 85 3 57 61 0 19 19 1.34 96920--96994 21 3.2 24 73 19 77 10 24 8 57 1.59 99338--99412 18 4.2 18 96 3 118 30 5 29 34 1.80 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2