NC_052748.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_052748.1 Callicarpa formosana chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154210
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
111--158 23 2.1 23 81 14 55 25 2 0 72 0.95
112--160 16 3.0 16 85 8 55 22 2 0 75 0.90
6506--6538 11 3.1 11 91 4 50 60 0 0 39 0.97
6924--6956 16 2.1 16 88 11 50 45 6 6 42 1.53
7027--7061 17 2.1 17 100 0 70 48 28 5 17 1.69
8785--8830 13 3.7 13 81 18 53 0 34 0 65 0.93
8788--8828 20 2.0 20 100 0 82 0 34 0 65 0.93
30190--30215 13 2.0 13 100 0 52 38 7 15 38 1.76
30985--31015 15 2.1 15 100 0 62 48 12 12 25 1.77
47572--47611 16 2.7 14 81 11 53 25 15 0 60 1.35
47809--47859 25 2.0 25 100 0 102 41 7 23 27 1.82
59928--59959 16 2.0 16 93 0 55 25 15 18 40 1.90
61003--61047 21 2.1 21 95 0 81 28 24 15 31 1.96
69025--69065 21 2.0 21 95 0 73 29 26 9 34 1.88
78813--78840 14 2.0 14 100 0 56 42 7 0 50 1.30
89739--89793 24 2.5 22 85 8 67 14 23 12 49 1.78
89761--89828 21 3.2 21 77 8 75 11 22 10 55 1.65
92151--92258 18 6.2 18 93 3 159 31 8 25 35 1.85
99970--100006 17 2.2 16 86 13 56 29 0 24 45 1.53
100765--100801 18 2.1 18 100 0 74 45 10 16 27 1.80
107957--108017 31 2.0 31 93 0 104 40 21 9 27 1.85
110646--110676 13 2.4 13 100 0 62 67 6 0 25 1.14
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112309--112347 20 2.0 20 85 10 53 56 23 0 20 1.42
113875--113912 18 2.1 18 100 0 76 26 5 15 52 1.64
121435--121466 16 2.0 16 100 0 64 50 12 18 18 1.78
126004--126043 20 2.0 20 85 9 55 7 12 2 77 1.07
127148--127229 27 3.1 26 87 8 96 0 17 7 75 1.02
127187--127231 12 3.5 12 77 16 54 0 11 13 75 1.05
127159--127226 14 4.9 15 79 15 83 0 16 8 75 1.05
127170--127231 27 2.3 27 97 0 115 0 14 9 75 1.03
131132--131192 31 2.0 31 93 0 104 27 9 21 40 1.85
138348--138384 18 2.1 18 100 0 74 27 16 10 45 1.80
139143--139177 17 2.0 18 94 5 63 48 22 0 28 1.51
146891--146986 18 5.3 18 96 0 165 33 26 9 31 1.88
146891--146998 18 6.2 18 93 3 159 35 25 8 31 1.85
149339--149392 21 2.6 21 82 11 74 59 11 20 9 1.59
149321--149410 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!