NC_052912.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_052912.1 Polygala japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 165439
Tables: 1
This is table 1 of 1 ( 93 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6--36 16 2.0 15 93 6 53 58 12 6 22 1.58
3691--3732 22 1.9 22 90 0 66 45 16 14 23 1.84
4608--4652 22 2.0 22 91 0 72 24 22 6 46 1.75
5203--5240 20 1.9 20 100 0 76 47 10 0 42 1.38
9795--9819 12 2.1 12 100 0 50 44 8 0 48 1.32
13275--13308 14 2.5 14 85 4 52 35 20 2 41 1.68
15425--15463 19 2.1 19 95 0 69 28 17 7 46 1.76
15639--15709 24 3.0 24 82 12 76 26 4 2 66 1.24
15605--15687 4 21.2 4 72 16 50 26 2 3 67 1.19
17237--17397 53 3.0 53 100 0 322 49 1 3 45 1.31
17238--17373 26 5.2 26 67 22 104 48 2 3 45 1.32
17295--17382 26 3.2 30 69 21 100 46 2 4 46 1.35
17453--17497 15 2.8 16 90 6 65 53 4 2 40 1.33
22714--22741 14 2.0 14 100 0 56 42 14 7 35 1.73
24133--24181 2 25.5 2 87 8 75 48 0 0 51 1.00
24133--24226 19 4.8 21 71 17 76 45 0 0 54 0.99
24134--24184 17 3.0 17 97 0 93 49 0 0 50 1.00
37483--37507 13 1.9 13 100 0 50 56 0 28 16 1.41
42463--42488 13 2.0 13 100 0 52 30 0 7 61 1.24
46422--46468 23 2.0 23 100 0 94 29 12 8 48 1.71
59216--59246 16 2.0 16 93 6 55 48 12 0 38 1.42
63277--63317 21 2.0 21 95 0 73 17 7 4 70 1.28
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
65393--65436 22 2.0 22 100 0 88 54 4 4 36 1.41
68449--68497 22 2.3 21 83 10 64 40 12 6 40 1.67
68490--68523 16 2.1 17 94 5 61 41 11 0 47 1.40
68606--68681 18 4.1 18 83 13 91 35 15 10 38 1.82
71302--71345 6 7.3 6 78 0 52 18 22 0 59 1.38
71302--71347 18 2.6 18 86 6 58 19 23 0 56 1.42
71319--71366 18 2.6 19 87 6 64 22 25 2 50 1.60
71350--71426 30 2.6 30 85 0 109 28 25 3 41 1.73
71412--71451 18 2.2 18 90 0 62 20 22 2 55 1.56
79060--79098 15 2.6 15 88 8 53 38 5 2 53 1.37
85737--85789 27 2.0 27 85 14 74 64 0 15 20 1.29
85737--85788 12 4.0 13 73 26 56 63 0 15 21 1.31
86679--86726 24 2.0 24 95 0 87 18 8 31 41 1.80
88425--88481 21 2.7 21 91 0 87 21 28 19 31 1.97
88556--88601 21 2.1 22 88 11 69 10 23 8 56 1.61
90238--90310 30 2.4 30 93 0 119 35 31 4 28 1.76
90543--90578 18 2.0 18 100 0 72 27 16 11 44 1.82
90964--91067 9 12.2 9 79 11 103 31 7 31 28 1.85
90964--91067 24 4.1 24 85 3 91 31 7 31 28 1.85
92412--92484 9 8.1 9 73 0 56 28 23 21 26 1.99
92445--92497 18 2.9 18 75 5 54 28 16 24 30 1.97
92544--92592 9 5.4 9 87 0 71 28 22 28 20 1.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98894--98932 14 2.8 14 88 7 53 17 7 0 74 1.05
100495--100534 20 2.0 20 100 0 80 45 15 25 15 1.84
102172--102266 32 3.0 32 95 0 172 34 12 21 31 1.91
102281--102322 22 1.9 22 100 0 84 42 11 23 21 1.86
102283--102330 22 2.2 22 88 3 71 43 10 18 27 1.82
111493--111590 18 5.1 18 84 13 133 28 39 9 22 1.85
111494--111542 24 2.0 24 96 0 89 28 44 6 20 1.75
111998--112090 18 5.2 18 85 0 87 52 16 16 15 1.75
113294--113338 22 2.0 23 87 12 67 80 2 11 6 0.99
113299--113338 12 3.5 12 80 19 50 82 0 12 5 0.82
113963--114052 30 3.0 30 93 0 153 54 16 16 12 1.71
120347--120380 16 2.1 16 89 10 52 44 8 11 35 1.72
122167--122205 20 2.0 20 85 10 53 56 23 0 20 1.42
122945--122985 19 2.2 19 100 0 82 29 9 9 51 1.67
123139--123191 9 5.4 11 75 25 64 43 0 0 56 0.99
123143--123196 8 6.0 8 76 23 54 44 0 0 55 0.99
123137--123194 19 3.1 19 100 0 116 41 0 0 58 0.98
123533--123565 2 17.0 2 87 6 50 45 0 3 51 1.16
123538--123568 11 2.9 11 95 4 55 45 0 0 54 0.99
123746--123777 15 2.2 15 94 5 57 81 3 0 15 0.82
128782--128815 15 2.1 16 89 10 52 35 11 8 44 1.72
135110--135199 30 3.0 30 93 0 153 12 16 16 54 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
135824--135863 12 3.5 12 80 19 50 5 12 0 82 0.82
135824--135868 22 2.0 23 87 12 67 6 11 2 80 0.99
137104--137164 18 3.4 18 90 0 86 18 18 16 47 1.83
137572--137644 18 4.1 18 100 0 146 21 10 38 28 1.88
137620--137668 24 2.0 24 96 0 89 20 6 44 28 1.75
146701--146756 29 2.1 25 84 15 69 19 23 10 46 1.81
146840--146881 22 1.9 22 100 0 84 21 23 11 42 1.86
146896--146990 32 3.0 32 95 0 172 31 21 12 34 1.91
148628--148667 20 2.0 20 100 0 80 15 25 15 45 1.84
150230--150268 14 2.8 14 88 7 53 74 0 7 17 1.05
156570--156618 9 5.4 9 87 0 71 20 28 22 28 1.98
156678--156750 9 8.1 9 73 0 56 26 21 23 28 1.99
156665--156717 18 2.9 18 75 5 54 30 24 16 28 1.97
156692--156778 45 1.9 45 83 0 111 24 22 22 29 1.99
156946--157013 33 2.1 33 85 0 91 7 42 16 33 1.76
158141--158198 9 6.4 9 91 0 98 24 32 10 32 1.89
158095--158198 18 6.1 18 78 10 103 28 31 7 31 1.85
158088--158194 24 4.2 27 83 7 109 28 31 10 29 1.90
158117--158202 18 4.9 18 81 7 106 29 31 8 31 1.86
158155--158208 27 2.0 27 85 0 72 31 31 7 29 1.85
158584--158619 18 2.0 18 100 0 72 44 11 16 27 1.82
158852--158924 30 2.4 30 93 0 119 28 4 31 35 1.76
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
160561--160606 21 2.1 21 88 11 67 56 8 23 10 1.61
160681--160737 21 2.7 21 91 0 87 31 19 28 21 1.97
162436--162483 24 2.0 24 95 0 87 41 31 8 18 1.80
163374--163425 12 4.0 13 73 26 56 21 15 0 63 1.31
163373--163425 27 2.0 27 85 14 74 20 15 0 64 1.29
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Tables: 1
The End!