NC_053353.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_053353.1 Abelmoschus manihot chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 163428 Tables: 1 2 This is table 1 of 2 ( 133 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 5129--5191 3 21.7 3 77 9 51 31 1 0 66 1.01 5324--5369 14 3.5 14 71 17 53 52 13 6 28 1.65 5318--5369 25 2.1 25 100 0 104 51 11 7 28 1.65 6913--6942 9 3.3 9 90 0 51 26 0 0 73 0.84 6947--6974 13 2.2 13 100 0 56 32 0 7 60 1.24 6962--6999 19 2.0 19 100 0 76 36 0 15 47 1.46 7043--7076 17 2.0 17 94 0 59 58 8 5 26 1.51 7127--7160 17 2.0 17 94 0 59 47 20 11 20 1.81 7525--7549 12 2.1 12 100 0 50 60 0 16 24 1.36 8749--8788 17 2.3 17 95 4 71 40 0 12 47 1.41 8749--8782 9 3.9 9 92 7 61 41 0 11 47 1.40 10716--10757 19 2.2 19 100 0 84 30 9 9 50 1.67 14119--14144 12 2.2 12 100 0 52 42 7 15 34 1.75 14253--14294 21 2.0 21 95 0 75 69 7 4 19 1.31 28675--28705 12 2.7 12 95 5 55 64 6 0 29 1.18 28696--28764 7 10.4 7 72 21 60 63 0 1 34 1.03 28684--28770 19 4.8 18 82 16 108 62 1 1 35 1.11 28708--28782 2 39.5 2 77 15 70 58 0 1 40 1.06 28684--28782 10 9.0 12 73 21 67 60 1 1 37 1.10 28684--28782 33 2.9 36 78 17 104 60 1 1 37 1.10 30425--30456 13 2.4 14 85 15 50 56 6 12 25 1.59 30700--30738 17 2.3 17 95 0 69 25 7 10 56 1.59 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 33137--33175 14 3.0 14 89 10 57 69 12 5 12 1.35 33433--33474 21 2.0 21 100 0 84 57 9 0 33 1.31 33645--33729 2 44.0 2 73 6 68 55 1 2 41 1.20 33645--33733 10 8.2 10 76 15 79 56 1 2 40 1.19 33645--33736 24 3.7 24 85 7 112 55 1 3 40 1.23 33666--33741 26 3.0 26 90 3 111 52 2 3 40 1.34 34960--34990 13 2.4 13 100 0 62 54 12 16 16 1.71 38248--38286 19 2.1 19 100 0 78 33 10 5 51 1.58 38357--38417 30 2.0 30 100 0 122 37 9 32 19 1.85 38931--38969 20 2.0 20 84 0 51 76 0 10 12 1.01 39028--39193 17 10.0 17 73 20 120 65 0 3 30 1.09 39031--39193 22 7.0 23 75 16 106 65 0 3 30 1.10 39030--39182 24 6.0 25 75 20 101 66 0 3 30 1.07 39615--39649 9 4.0 9 92 7 63 34 8 11 45 1.71 39616--39649 17 2.0 17 100 0 68 35 5 11 47 1.65 44939--44969 15 2.1 15 100 0 62 19 12 0 67 1.22 45515--45557 14 3.1 14 93 6 79 37 6 0 55 1.27 45517--45557 13 3.1 13 93 6 73 36 7 0 56 1.27 45653--45687 17 2.1 17 94 0 61 54 0 5 40 1.24 47698--47743 2 24.5 2 85 12 62 54 0 0 45 0.99 47694--47748 17 3.2 17 87 5 76 58 0 0 41 0.98 49312--49352 20 2.0 20 100 0 82 29 0 14 56 1.39 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 49367--49421 16 3.6 14 77 17 56 81 0 3 14 0.82 49374--49414 18 2.3 18 86 0 55 82 0 2 14 0.76 49357--49414 30 1.9 30 83 13 75 81 3 1 13 0.91 49430--49490 24 2.5 24 86 5 79 60 3 1 34 1.23 49519--49547 14 2.1 14 100 0 58 65 0 0 34 0.93 50063--50105 12 3.6 12 93 0 68 41 13 2 41 1.57 50124--50153 15 2.0 15 100 0 60 60 0 6 33 1.23 51736--51784 20 2.4 20 82 3 62 14 6 2 77 1.05 54396--54429 13 2.7 13 95 4 61 38 5 0 55 1.24 54498--54541 22 2.0 22 100 0 88 40 4 0 54 1.21 54630--54672 19 2.3 19 96 4 79 20 4 0 74 1.00 54628--54672 14 3.3 13 87 9 63 22 4 0 73 1.01 54630--54709 19 4.2 20 80 12 73 25 7 0 67 1.16 54689--54848 13 12.3 13 70 16 91 38 1 0 59 1.08 54692--54847 19 7.9 20 79 14 150 39 1 0 58 1.09 54733--54831 37 2.6 38 92 7 166 40 0 0 59 0.97 54733--54843 58 1.9 57 85 12 156 41 0 0 58 0.98 54836--54883 20 2.4 20 100 0 96 45 0 8 45 1.33 54694--54847 2 82.5 2 66 13 78 39 1 0 58 1.09 58691--58722 11 2.9 11 95 0 55 15 18 9 56 1.66 59082--59118 16 2.3 16 95 0 65 29 13 2 54 1.53 59114--59281 20 7.6 22 68 19 82 34 3 0 61 1.13 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 59164--59479 12 28.5 11 67 23 82 36 0 0 62 1.01 59101--59332 102 2.3 101 79 12 230 35 3 0 61 1.12 59121--59483 19 19.8 19 68 24 71 36 1 0 61 1.05 59331--59390 25 2.3 26 83 11 88 48 0 0 51 1.00 59397--59474 3 26.3 3 76 23 69 30 0 0 69 0.89 59397--59479 16 5.0 15 69 21 58 31 0 0 68 0.90 59117--59483 34 11.0 34 68 22 174 36 1 0 61 1.04 64064--64097 17 2.0 17 88 0 50 38 2 11 47 1.55 65872--65898 13 2.1 13 100 0 54 62 0 7 29 1.22 68090--68142 26 2.0 26 96 0 97 35 11 20 32 1.88 68408--68437 13 2.4 12 94 5 51 56 0 13 30 1.37 68682--68727 2 25.0 2 79 16 55 52 0 0 47 1.00 68679--68725 23 2.0 25 91 8 80 53 0 0 46 1.00 71124--71167 19 2.3 18 77 11 52 34 2 0 63 1.07 72877--72910 17 2.0 17 88 0 50 35 5 5 52 1.50 72902--72968 29 2.3 29 87 7 93 35 0 0 64 0.94 72897--72967 32 2.2 32 83 13 94 36 0 0 63 0.95 72983--73026 20 2.5 16 75 25 52 45 4 0 50 1.22 72990--73029 20 2.0 20 100 0 80 45 5 0 50 1.23 73185--73223 21 1.9 21 94 5 71 30 25 10 33 1.89 76481--76518 16 2.5 15 84 12 51 28 18 0 52 1.45 76484--76516 16 2.1 16 94 0 57 27 21 0 51 1.48 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 82200--82225 13 2.0 13 100 0 52 53 0 15 30 1.42 89642--89676 17 2.1 17 100 0 70 54 5 0 40 1.24 89954--90005 20 2.5 20 75 3 59 28 0 1 69 0.99 89989--90035 14 3.4 14 77 16 53 44 0 0 55 0.99 90641--90671 14 2.2 14 100 0 62 29 12 6 51 1.65 94838--94906 21 3.3 21 87 2 95 11 24 8 55 1.64 97275--97346 18 4.2 18 85 5 96 30 9 25 34 1.88 97287--97345 9 6.6 9 78 0 55 30 11 27 30 1.92 99969--100011 20 2.0 20 91 8 68 51 0 4 44 1.22 105214--105324 17 7.1 17 74 20 98 20 11 4 63 1.45 105208--105304 44 2.2 44 98 0 185 19 12 4 63 1.44 105294--105321 14 2.0 14 100 0 56 14 14 0 71 1.15 105318--105403 6 15.2 6 80 16 94 36 1 15 47 1.53 105318--105403 11 7.6 12 78 15 94 36 1 15 47 1.53 105319--105402 27 3.0 28 84 7 107 36 1 15 46 1.54 113550--113611 32 1.9 32 96 0 115 38 22 9 29 1.86 114346--114384 17 2.3 17 100 0 78 25 10 0 64 1.25 114845--114879 17 2.1 17 94 0 61 45 11 20 22 1.82 116354--116397 21 2.1 21 83 8 54 70 4 4 20 1.23 117939--117980 20 2.0 20 82 13 50 54 21 2 21 1.56 119672--119711 20 2.0 20 100 0 80 20 5 15 60 1.53 119832--119857 13 2.0 13 100 0 52 69 0 0 30 0.89 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 122098--122130 17 1.9 17 100 0 66 24 12 0 63 1.28 124364--124409 16 3.0 16 90 6 69 41 8 0 50 1.33 124782--124845 28 2.3 28 97 0 119 54 4 14 26 1.59 134024--134053 15 2.0 15 100 0 60 40 13 13 33 1.83 136744--136778 17 2.1 17 94 0 61 22 20 11 45 1.82 137239--137277 17 2.3 17 100 0 78 64 0 10 25 1.25 138012--138073 32 1.9 32 96 0 115 29 9 22 38 1.86 146220--146305 6 15.2 6 80 13 94 47 15 1 36 1.53 146216--146305 11 8.1 11 78 14 80 47 15 1 35 1.53 146222--146299 27 2.8 28 86 3 104 47 14 1 37 1.52 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2