NC_053365.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053365.1 Trachycarpus fortunei chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158613
Tables: 1
This is table 1 of 1 ( 89 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
22--51 11 2.9 10 90 9 51 86 0 3 10 0.67
3961--4005 15 3.0 15 100 0 90 53 0 0 46 1.00
3969--4022 15 3.4 16 79 18 60 59 0 0 40 0.98
3984--4031 20 2.5 21 83 16 68 58 0 0 41 0.98
8702--8740 13 3.0 13 92 7 62 15 7 0 76 0.99
8706--8740 17 2.1 17 88 0 52 17 5 0 77 0.96
8735--8780 14 3.2 14 81 3 56 28 6 0 65 1.17
8739--8803 28 2.2 30 79 17 75 36 4 0 58 1.19
8843--8923 13 5.9 13 78 18 85 62 0 9 27 1.26
8842--8925 28 3.0 26 81 11 105 60 0 10 28 1.30
8843--8923 41 2.0 41 83 13 105 62 0 9 27 1.26
8930--9003 35 2.1 35 80 14 82 43 4 4 48 1.40
8967--8997 15 2.1 15 100 0 62 48 0 6 45 1.28
9925--9982 14 4.2 14 95 2 100 27 6 1 63 1.29
14487--14531 2 23.0 2 82 13 58 48 0 4 46 1.22
15855--15879 12 2.1 12 100 0 50 32 8 0 60 1.26
16716--16771 28 2.0 28 96 0 103 30 10 0 58 1.32
16866--16895 15 2.0 15 100 0 60 26 13 20 40 1.89
29834--29957 2 64.0 2 68 12 71 45 0 1 52 1.16
29838--29892 19 2.8 19 91 2 83 38 0 3 58 1.16
29879--29955 34 2.2 35 81 6 95 50 1 0 48 1.09
30200--30262 16 4.1 16 84 9 78 46 3 6 44 1.45
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
30201--30262 17 4.1 15 78 15 56 46 3 6 43 1.45
32947--32978 15 2.1 15 100 0 64 43 6 12 37 1.68
36253--36295 21 2.0 21 95 0 77 37 16 9 37 1.81
37876--37901 13 2.0 13 100 0 52 38 7 0 53 1.30
45880--45911 16 2.0 16 100 0 64 31 25 6 37 1.81
47223--47253 14 2.2 14 94 0 53 35 9 0 54 1.33
47325--47354 15 2.0 15 100 0 60 33 6 6 53 1.53
47502--47546 2 23.0 2 82 13 58 46 0 4 48 1.22
48942--48979 17 2.2 17 100 0 76 28 10 0 60 1.30
49389--49423 14 2.5 14 90 0 52 85 2 2 8 0.79
51889--51919 16 1.9 16 93 0 53 54 9 9 25 1.63
51957--51992 18 2.0 18 100 0 72 50 5 5 38 1.49
52093--52135 17 2.6 17 92 7 72 76 4 4 13 1.10
52133--52171 17 2.3 17 100 0 78 61 0 5 33 1.18
53261--53289 13 2.1 14 93 6 51 13 0 6 79 0.93
58855--58886 16 2.0 16 100 0 64 37 25 0 37 1.56
61499--61526 11 2.5 11 100 0 56 35 17 0 46 1.49
61540--61638 21 5.3 18 73 17 60 50 0 0 49 1.00
61548--61599 21 2.5 22 84 6 72 50 0 0 50 1.00
61569--61648 24 3.3 23 76 17 74 50 0 0 50 1.00
61577--61656 27 3.0 25 77 20 81 51 0 0 48 1.00
61570--61621 18 2.9 18 74 20 56 46 0 0 53 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61668--61706 15 2.6 15 100 0 78 41 7 15 35 1.76
67155--67200 14 3.6 14 72 22 55 67 4 0 28 1.10
67155--67207 24 2.2 25 93 3 90 67 5 0 26 1.12
69262--69294 16 2.1 16 100 0 66 51 6 30 12 1.63
69574--69627 18 2.8 19 86 13 67 35 9 0 55 1.32
70077--70114 20 1.9 20 100 0 76 50 15 0 34 1.45
70058--70096 14 2.8 14 92 0 69 46 12 2 38 1.56
70203--70237 16 2.2 16 89 0 52 40 0 14 45 1.45
78728--78773 20 2.3 20 96 3 85 32 13 15 39 1.85
81747--81795 24 2.0 24 96 0 89 28 30 12 28 1.93
84116--84164 18 2.7 18 87 0 71 53 0 0 46 1.00
84115--84174 9 6.6 9 76 1 57 51 0 1 46 1.10
84195--84227 16 2.1 16 100 0 66 33 6 6 54 1.50
84271--84295 12 2.1 12 100 0 50 52 0 16 32 1.44
84678--84721 11 3.9 11 83 13 54 9 2 0 88 0.59
84664--84727 14 4.5 14 77 15 60 14 3 0 82 0.78
85284--85323 20 2.0 20 100 0 80 40 25 5 30 1.77
89404--89434 15 2.1 15 100 0 62 19 32 0 48 1.49
91676--91758 21 3.8 21 91 4 121 14 27 10 46 1.78
91697--91765 21 3.3 21 95 0 120 13 31 8 46 1.73
94115--94205 15 5.6 17 74 16 86 32 6 24 36 1.81
94122--94198 24 3.2 24 100 0 154 33 7 24 33 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115907--115943 17 2.2 17 95 0 65 16 0 10 72 1.10
120552--120621 17 4.2 17 82 12 76 47 0 0 52 1.00
120576--120710 3 47.3 3 73 10 113 62 0 0 37 0.96
120587--120652 26 2.6 26 97 2 125 56 0 0 43 0.99
120568--120671 17 6.0 17 73 17 72 56 0 0 43 0.99
120674--120734 23 2.7 22 80 7 70 78 0 0 21 0.75
120574--120712 14 10.0 14 77 11 117 61 0 0 38 0.96
120660--120734 7 10.1 7 77 17 55 74 0 0 25 0.82
120734--120783 19 2.6 19 96 3 91 48 0 6 46 1.27
120721--120800 31 2.5 31 82 6 90 52 0 5 42 1.23
120734--120793 19 3.1 19 88 7 59 48 0 6 45 1.29
120748--120800 12 4.8 12 78 21 71 49 0 5 45 1.26
120796--120853 17 3.6 17 77 17 79 58 0 5 36 1.20
120795--120885 30 3.0 30 87 6 112 57 2 3 37 1.28
124018--124065 23 2.1 23 100 0 96 0 27 12 60 1.32
129189--129224 18 2.0 18 100 0 72 50 0 0 50 1.00
129896--129923 12 2.3 12 100 0 56 21 7 0 71 1.09
150835--150909 9 9.0 9 66 16 54 33 25 8 33 1.85
150831--150921 15 5.6 17 74 16 86 36 24 6 32 1.81
150838--150914 24 3.2 24 100 0 154 33 24 7 33 1.84
153271--153339 21 3.3 21 95 0 120 46 8 31 13 1.73
153278--153360 21 3.8 21 91 4 121 46 10 27 14 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
155602--155632 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!