NC_053532.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053532.1 Epimedium pubescens chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158956
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7--38 16 2.0 16 100 0 64 37 12 6 43 1.68
29663--29694 15 2.1 15 94 0 55 21 12 15 50 1.77
41338--41368 15 2.1 15 93 0 53 9 25 41 22 1.84
52545--52571 14 1.9 14 100 0 54 70 0 7 22 1.12
59517--59555 20 2.0 20 89 0 60 28 10 2 58 1.44
74174--74324 48 2.9 53 79 13 177 29 18 15 36 1.92
74227--74324 48 2.0 48 96 0 178 31 20 14 33 1.92
81941--81987 24 2.0 24 86 0 67 25 36 14 23 1.93
87077--87102 13 2.0 13 100 0 52 23 7 7 61 1.49
89189--89236 14 3.5 13 88 5 60 62 4 12 20 1.46
89569--89635 33 2.0 33 88 0 98 31 17 29 20 1.96
94550--94597 9 5.3 9 89 0 69 33 0 35 31 1.58
94546--94597 18 2.9 18 82 0 77 34 0 34 30 1.58
94546--94598 27 2.0 27 96 0 97 33 0 33 32 1.58
110827--110857 15 2.1 15 100 0 62 61 0 32 6 1.21
113304--113361 24 2.4 24 83 13 75 62 8 20 8 1.51
113508--113543 15 2.4 15 95 0 63 55 5 19 19 1.62
113713--113767 12 4.6 12 93 0 83 45 12 34 7 1.70
113775--113913 66 2.1 67 90 4 217 43 17 20 17 1.88
113878--113953 24 3.2 24 67 14 66 46 15 21 17 1.84
113868--113961 48 2.0 48 95 0 170 45 15 20 18 1.85
130331--130369 18 2.2 18 86 9 53 35 12 7 43 1.72
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
131340--131433 48 2.0 48 95 0 170 18 20 15 45 1.85
131388--131526 66 2.1 67 90 4 217 17 20 17 43 1.88
131534--131588 12 4.6 12 93 0 83 7 34 12 45 1.70
131758--131793 15 2.4 15 95 0 63 19 19 5 55 1.62
131831--131907 33 2.3 33 84 4 93 24 24 7 42 1.81
131940--131997 24 2.4 25 80 16 77 8 20 8 62 1.51
134444--134474 15 2.1 15 100 0 62 6 32 0 61 1.21
150708--150755 9 5.3 9 89 0 69 29 35 0 35 1.58
150703--150755 27 2.0 27 96 0 97 32 33 0 33 1.58
150704--150755 18 2.9 18 82 0 77 30 34 0 34 1.58
155666--155732 33 2.0 33 88 0 98 20 29 17 31 1.96
156065--156112 14 3.5 13 86 8 60 20 12 4 62 1.46
158199--158224 13 2.0 13 100 0 52 61 7 7 23 1.49
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Tables: 1
The End!