NC_053687.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053687.1 Polygonatum cirrhifolium chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155583
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7245--7269 12 2.1 12 100 0 50 44 8 8 40 1.63
7913--7943 15 2.1 15 100 0 62 16 25 0 58 1.38
9103--9141 10 3.9 10 82 0 51 61 10 0 28 1.28
9102--9141 20 2.0 20 100 0 80 60 10 0 30 1.30
9412--9466 7 7.0 8 82 18 55 52 0 0 47 1.00
9412--9458 16 2.9 16 84 12 53 53 0 0 46 1.00
9430--9500 2 38.0 2 72 18 55 46 0 2 50 1.16
10804--10856 26 2.0 26 100 0 106 49 0 16 33 1.47
35823--35852 14 2.1 14 100 0 60 20 6 23 50 1.71
44781--44810 15 2.0 15 93 0 51 43 0 36 20 1.52
46696--46751 16 3.7 16 76 13 73 39 7 5 48 1.54
50894--50949 27 2.0 28 86 10 80 53 10 3 32 1.53
51027--51060 13 2.6 14 90 9 54 38 0 0 61 0.96
57345--57371 14 1.9 14 100 0 54 62 7 14 14 1.51
58325--58370 21 2.2 21 84 0 56 36 2 15 45 1.58
60994--61023 10 3.1 10 90 9 53 63 6 0 30 1.20
61282--61315 12 2.7 13 90 9 61 29 8 0 61 1.26
68384--68424 21 2.0 21 90 4 66 68 4 2 24 1.22
68500--68543 21 2.1 21 91 0 70 31 25 11 31 1.91
79847--79892 24 1.9 24 90 0 74 26 34 13 26 1.92
82690--82726 19 1.9 19 94 0 65 27 5 2 64 1.28
87030--87081 23 2.3 23 96 3 97 46 7 21 25 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89517--89630 21 5.1 21 86 9 138 13 26 10 50 1.73
89517--89623 45 2.4 45 95 0 187 14 26 11 48 1.76
91983--92049 24 3.6 18 74 25 59 32 7 22 37 1.82
91990--92042 24 2.2 24 96 0 97 33 9 22 33 1.86
100993--101030 18 2.1 18 100 0 76 34 15 0 50 1.45
113741--113773 17 2.0 16 94 5 57 30 6 18 45 1.73
114545--114580 11 3.5 11 78 21 51 38 0 5 55 1.23
114541--114592 19 2.7 19 93 3 86 36 0 3 59 1.16
121512--121553 17 2.3 18 80 16 50 47 11 4 35 1.61
128223--128251 15 1.9 15 100 0 58 34 6 6 51 1.55
138966--139003 18 2.1 18 100 0 76 50 0 15 34 1.45
147947--148013 24 3.6 18 74 25 59 37 22 7 32 1.82
147954--148006 24 2.2 24 96 0 97 33 22 9 33 1.86
150373--150479 45 2.4 45 95 0 187 48 11 26 14 1.76
150366--150479 21 5.1 21 86 9 138 50 10 26 13 1.73
152915--152966 23 2.3 23 96 3 97 25 21 7 46 1.77
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Tables: 1
The End!