NC_053705.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053705.1 Solidago decurrens chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152728
Tables: 1
This is table 1 of 1 ( 67 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1547--1623 38 2.0 38 100 0 154 40 12 5 41 1.66
4325--4360 18 2.0 18 94 0 63 36 16 0 47 1.47
4905--4936 15 2.1 15 94 0 55 50 6 15 28 1.68
9166--9207 15 2.9 15 86 10 52 69 2 0 28 1.01
9166--9207 4 10.2 4 80 14 50 69 2 0 28 1.01
10201--10230 14 2.1 14 100 0 60 36 6 26 30 1.82
12383--12425 21 2.0 21 100 0 86 46 9 13 30 1.75
25125--25149 12 2.1 12 100 0 50 60 8 8 24 1.52
29892--29923 16 2.0 16 100 0 64 31 0 25 43 1.55
30011--30075 34 1.9 33 96 3 121 44 6 12 36 1.67
30268--30313 21 2.1 22 96 4 85 52 26 4 17 1.63
31021--31062 21 2.0 20 95 4 75 28 9 0 61 1.27
30974--31158 26 7.1 26 77 13 136 38 4 0 56 1.21
31046--31155 3 35.7 3 73 18 59 40 1 0 58 1.09
31090--31154 19 3.3 19 83 12 87 41 0 0 58 0.98
30999--31123 56 2.3 54 79 10 130 39 4 0 56 1.21
31277--31330 22 2.3 23 87 9 83 57 7 5 29 1.49
31287--31330 22 2.0 22 100 0 88 59 9 4 27 1.48
31361--31389 11 2.6 11 100 0 58 51 10 0 37 1.36
31827--31870 15 3.3 13 82 14 54 40 11 0 47 1.39
31832--31865 15 2.3 15 100 0 68 41 11 0 47 1.40
31833--31882 15 3.7 14 82 15 61 40 12 0 48 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
36215--36262 24 2.0 24 88 8 71 50 0 0 50 1.00
36287--36316 12 2.4 13 88 11 53 70 0 6 23 1.11
46628--46669 21 2.0 21 100 0 84 42 19 19 19 1.89
46757--46813 12 4.3 12 80 12 51 45 0 0 54 0.99
46754--46813 15 4.3 15 81 14 65 45 0 0 55 0.99
46754--46813 27 2.1 29 87 6 88 45 0 0 55 0.99
46926--46982 17 3.4 16 75 20 55 26 1 0 71 0.95
46936--46987 11 4.7 12 77 20 51 26 0 0 73 0.84
46941--46991 20 2.5 19 82 17 59 29 0 0 70 0.87
46948--46995 24 2.0 24 84 8 62 31 0 0 68 0.90
46976--47059 43 2.0 41 86 4 114 48 0 0 51 1.00
50822--50858 18 2.1 18 94 0 65 48 0 8 43 1.32
52339--52368 13 2.4 12 94 5 51 10 16 0 73 1.09
59161--59186 13 2.0 13 100 0 52 53 0 0 46 1.00
59285--59351 35 1.9 34 82 8 82 55 1 2 40 1.24
60952--60983 16 2.0 16 100 0 64 56 0 31 12 1.37
68012--68051 21 1.9 21 89 0 62 32 22 10 35 1.87
69881--69919 16 2.4 17 87 12 55 51 12 12 23 1.74
72086--72151 19 3.5 19 68 22 50 24 9 0 66 1.20
75470--75518 22 2.3 21 92 3 80 77 4 0 18 0.92
77239--77408 4 43.5 4 70 19 76 33 1 0 65 1.01
77251--77297 19 2.5 20 86 10 71 31 4 0 63 1.13
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
77243--77412 22 7.9 22 74 19 94 34 1 0 64 1.01
77270--77412 12 11.2 12 72 23 91 34 0 0 65 0.98
77300--77418 42 3.0 41 79 18 135 36 0 0 63 0.95
77268--77416 60 2.6 57 77 15 164 34 0 0 65 0.98
82168--82210 20 2.2 20 100 0 86 55 0 0 44 0.99
91834--91908 18 4.4 17 88 8 73 29 8 25 37 1.84
91845--91908 9 7.1 9 74 0 65 29 7 26 35 1.85
91844--91921 18 4.3 18 96 0 138 29 10 25 34 1.89
99594--99655 31 2.0 31 100 0 124 35 6 9 48 1.62
107561--107624 32 2.0 32 93 0 110 39 26 7 26 1.83
113057--113096 21 1.9 21 94 0 71 22 2 32 42 1.67
114306--114349 22 2.0 22 100 0 88 50 9 4 36 1.55
116968--117005 19 2.0 19 89 0 58 36 0 0 63 0.95
124072--124096 12 2.1 12 100 0 50 16 8 8 68 1.38
124309--124398 37 2.5 37 94 1 155 42 8 10 38 1.70
124973--125010 19 2.0 19 94 0 67 42 0 18 39 1.50
125299--125354 14 3.9 15 81 11 64 57 1 0 41 1.09
127678--127702 12 2.1 12 100 0 50 16 16 8 60 1.58
129704--129767 32 2.0 32 93 0 110 26 7 26 39 1.83
137673--137734 31 2.0 31 100 0 124 48 9 6 35 1.62
145407--145484 18 4.3 18 96 0 138 34 25 10 29 1.89
145407--145484 9 8.7 9 71 0 66 34 25 10 29 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145456--145494 18 2.4 16 87 12 53 41 23 5 30 1.76
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!