NC_053780.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053780.1 Arnebia guttata voucher KIOM201901022035 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150311
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
105--170 2 36.0 2 72 17 54 53 1 0 45 1.09
105--170 9 7.4 9 70 16 57 53 1 0 45 1.09
114--168 16 3.7 15 85 9 78 52 1 0 45 1.11
3571--3605 14 2.6 14 90 4 54 22 14 11 51 1.74
7708--7742 18 1.9 18 94 0 61 77 2 8 11 1.10
28652--28677 13 2.0 13 100 0 52 38 23 0 38 1.55
39391--39419 15 1.9 15 100 0 58 17 27 34 20 1.95
41346--41386 20 2.0 20 100 0 82 43 0 4 51 1.23
41348--41394 20 2.3 20 92 0 76 40 2 6 51 1.39
41620--41718 49 2.0 49 100 0 198 49 10 10 30 1.69
43807--43848 22 1.9 22 85 0 57 54 9 11 23 1.66
48988--49012 12 2.1 12 100 0 50 24 16 32 28 1.96
65809--65849 21 2.0 21 95 0 73 31 26 9 31 1.89
72804--72840 18 2.1 18 100 0 74 32 0 21 45 1.52
84104--84159 20 2.8 20 97 0 103 48 12 10 28 1.74
84160--84220 30 2.0 30 96 0 113 34 16 29 19 1.94
84491--84527 18 2.1 18 94 0 65 54 5 10 29 1.57
86800--86854 24 2.5 22 85 8 67 14 23 12 49 1.78
86822--86889 21 3.2 21 77 8 75 11 22 8 57 1.61
89242--89293 24 2.2 24 92 0 86 32 23 15 28 1.95
108825--108867 20 2.1 20 83 12 52 55 20 2 20 1.54
142286--142337 24 2.2 24 92 0 86 28 15 23 32 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144690--144779 21 4.1 22 75 8 76 54 10 23 12 1.67
147052--147088 18 2.1 18 94 0 65 29 10 5 54 1.57
147359--147419 30 2.0 30 96 0 113 19 29 16 34 1.94
147420--147475 20 2.8 20 97 0 103 28 10 12 48 1.74
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Tables: 1
The End!