NC_053782.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053782.1 Arnebia euchroma voucher KIOM201901022425 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150250
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
96--170 11 6.6 12 76 16 61 58 1 1 38 1.15
96--170 21 3.4 22 80 9 73 58 1 1 38 1.15
144--184 21 2.0 21 85 0 55 73 0 2 24 0.96
3568--3602 14 2.6 14 90 4 54 22 14 11 51 1.74
4325--4358 17 2.0 17 94 0 59 61 0 14 23 1.33
39633--39661 15 1.9 15 100 0 58 17 27 34 20 1.95
42746--42770 11 2.3 11 100 0 50 16 8 8 68 1.38
46221--46248 13 2.2 13 100 0 56 60 7 7 25 1.48
63062--63106 11 4.2 11 85 5 65 64 0 4 31 1.13
63063--63108 21 2.2 21 96 3 85 65 0 4 30 1.12
65602--65642 21 2.0 21 95 0 73 31 26 9 31 1.89
72760--72790 14 2.2 14 100 0 62 70 0 0 29 0.87
83943--83998 20 2.8 20 97 0 103 46 12 10 30 1.76
86609--86663 24 2.5 22 85 8 67 14 23 12 49 1.78
86631--86698 21 3.2 21 77 8 75 11 22 8 57 1.61
89051--89102 24 2.2 24 92 0 86 32 23 15 28 1.95
108633--108675 20 2.1 20 83 12 52 55 20 2 20 1.54
111914--111955 21 2.0 21 100 0 84 66 9 0 23 1.21
119794--119818 11 2.3 11 100 0 50 16 0 0 84 0.63
142252--142303 24 2.2 24 92 0 86 28 15 23 32 1.95
144656--144745 21 4.1 22 75 8 76 54 10 23 12 1.67
147349--147398 20 2.8 17 76 23 50 28 14 12 46 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147356--147411 20 2.8 20 97 0 103 30 10 12 46 1.76
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Tables: 1
The End!