NC_053824.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053824.1 Rhus punjabensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159617
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
690--735 15 3.1 15 100 0 92 47 13 13 26 1.78
3947--3988 20 2.1 20 100 0 84 35 9 19 35 1.84
4937--4967 16 1.9 16 93 0 53 45 12 0 41 1.42
5235--5279 14 3.1 14 84 6 54 62 0 4 33 1.15
15506--15551 22 2.1 21 84 11 58 41 17 6 34 1.75
17202--17226 13 1.9 13 100 0 50 24 8 0 68 1.16
34817--34849 15 2.2 15 100 0 66 36 15 0 48 1.45
39541--39565 13 1.9 13 100 0 50 16 16 28 40 1.89
45427--45451 12 2.1 12 100 0 50 32 8 8 52 1.60
49451--49475 12 2.1 12 100 0 50 52 8 8 32 1.60
49627--49656 15 2.0 15 93 0 51 33 6 3 56 1.42
59682--59714 12 2.5 13 85 14 50 54 15 3 27 1.55
62255--62281 13 2.1 13 100 0 54 40 7 7 44 1.60
63973--63997 12 2.1 12 100 0 50 40 16 0 44 1.47
68508--68550 21 2.0 21 90 0 68 37 18 25 18 1.94
68969--69005 19 1.9 19 100 0 74 32 0 5 62 1.18
71431--71464 15 2.3 15 89 0 50 38 2 26 32 1.71
73661--73712 27 1.9 27 88 0 77 61 1 5 30 1.30
78323--78348 13 2.0 13 100 0 52 15 15 30 38 1.88
80468--80507 20 2.0 20 100 0 80 30 25 20 25 1.99
92432--92485 24 2.2 25 90 3 83 11 24 7 57 1.58
94850--94945 18 5.3 18 96 0 174 30 10 26 33 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
103210--103247 18 2.1 18 95 0 67 23 7 5 63 1.42
107784--107855 38 1.9 37 94 2 126 31 22 25 20 1.98
111382--111442 31 2.0 31 96 0 113 39 22 9 27 1.86
120025--120090 22 3.0 22 97 0 123 18 13 3 65 1.39
125967--125996 15 2.0 15 100 0 60 40 6 0 53 1.27
133113--133137 12 2.1 12 100 0 50 40 32 0 28 1.57
134295--134330 18 2.0 18 88 0 54 19 11 13 55 1.68
135870--135930 31 2.0 31 96 0 113 27 9 22 39 1.86
139457--139528 38 1.9 37 94 2 126 20 25 22 31 1.98
144065--144102 18 2.1 18 95 0 67 63 5 7 23 1.42
144593--144655 19 3.3 19 72 2 63 79 0 12 7 0.93
152367--152462 18 5.3 18 96 0 174 33 26 10 30 1.90
154827--154880 24 2.2 25 90 3 83 57 7 24 11 1.58
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Tables: 1
The End!