NC_053842.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053842.1 Gentiana scabra chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 146915
Tables: 1
This is table 1 of 1 ( 23 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6569--6593 11 2.3 11 100 0 50 44 0 8 48 1.32
10470--10497 14 2.0 14 100 0 56 28 7 0 64 1.20
12449--12474 12 2.2 12 100 0 52 23 7 0 69 1.14
33526--33553 14 2.0 14 100 0 56 64 0 0 35 0.94
33558--33586 13 2.2 13 100 0 58 55 0 6 37 1.27
39106--39132 12 2.2 12 100 0 54 44 0 14 40 1.46
39388--39418 15 2.1 15 100 0 62 38 6 6 48 1.55
51142--51169 13 2.2 13 100 0 56 50 7 7 35 1.57
51439--51472 17 2.0 17 100 0 68 35 17 11 35 1.87
54346--54370 12 2.1 12 100 0 50 32 24 8 36 1.84
55988--56017 15 1.9 16 93 6 53 40 6 0 53 1.27
63858--63898 21 2.0 21 85 0 55 34 29 7 29 1.84
81692--81749 20 2.9 20 94 0 98 41 10 18 29 1.84
86686--86726 15 2.7 15 100 0 82 39 4 14 41 1.67
86715--86754 18 2.2 18 95 0 71 32 7 25 35 1.84
102245--102307 31 2.0 31 90 0 99 42 22 9 25 1.83
103614--103638 12 2.1 12 100 0 50 32 8 8 52 1.60
120360--120403 12 3.4 13 84 15 56 4 13 6 75 1.17
122628--122652 12 2.1 12 100 0 50 52 8 8 32 1.60
123959--124021 31 2.0 31 90 0 99 25 9 22 42 1.83
139512--139551 18 2.2 18 95 0 71 35 25 7 32 1.84
139540--139580 15 2.7 15 100 0 82 41 14 4 39 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144517--144574 20 2.9 20 94 0 89 29 18 10 41 1.84
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!