NC_053892.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053892.1 Curculigo orchioides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157472
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4691--4722 13 2.5 13 100 0 64 18 0 6 75 1.01
6915--6944 15 2.0 15 100 0 60 66 6 6 20 1.38
7633--7674 18 2.3 18 87 0 66 64 11 0 23 1.27
8754--8807 17 3.2 16 82 12 56 64 0 7 27 1.20
13657--13681 12 2.1 12 100 0 50 44 8 0 48 1.32
21668--21703 18 2.0 18 100 0 72 11 27 5 55 1.57
29940--29964 12 2.1 12 100 0 50 36 8 24 32 1.84
48293--48329 18 2.0 18 94 5 65 21 5 0 72 1.04
48323--48362 13 3.2 13 92 3 64 35 12 0 52 1.39
48381--48419 9 4.3 9 90 0 51 51 0 0 48 1.00
48373--48440 11 6.7 11 74 15 58 48 0 0 51 1.00
48387--48444 14 4.1 14 77 18 59 46 0 0 53 1.00
48373--48413 2 22.5 2 81 18 54 53 0 0 46 1.00
49339--49379 2 21.5 2 90 9 68 51 0 0 48 1.00
49340--49378 13 3.0 13 100 0 78 53 0 0 46 1.00
54418--54447 15 2.0 15 100 0 60 40 26 6 26 1.81
59386--59418 11 3.0 11 100 0 66 18 0 9 72 1.10
61739--61776 19 2.0 19 94 0 67 52 2 10 34 1.50
61741--61784 19 2.3 19 88 0 61 47 6 15 29 1.72
67573--67613 20 2.0 20 100 0 82 56 9 0 34 1.32
70016--70071 7 7.7 7 76 13 51 42 3 0 53 1.18
70037--70090 23 2.5 21 88 8 74 50 0 0 50 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70037--70087 14 3.5 15 81 10 61 50 0 0 49 1.00
70443--70476 17 2.0 17 100 0 68 35 17 11 35 1.87
70570--70613 21 2.1 21 91 0 70 31 25 11 31 1.91
71060--71100 21 2.0 21 86 9 59 21 0 0 78 0.76
71051--71102 16 3.5 15 82 15 63 25 0 0 75 0.81
71057--71100 12 3.4 13 78 9 54 22 0 0 77 0.77
82174--82201 12 2.3 12 100 0 56 28 10 14 46 1.78
89491--89521 15 2.1 15 100 0 62 19 32 0 48 1.49
91799--91867 21 3.3 21 97 0 129 13 30 8 47 1.72
94211--94284 15 4.7 15 68 21 53 35 8 20 36 1.82
94218--94307 24 3.8 24 96 0 153 34 10 21 34 1.87
113572--113623 25 2.1 24 82 10 61 65 5 5 23 1.36
115852--115876 13 1.9 13 100 0 50 40 8 4 48 1.51
115948--115977 14 2.1 14 100 0 60 46 0 6 46 1.29
116058--116113 12 4.6 12 76 10 51 32 1 17 48 1.58
123370--123417 17 2.7 18 84 15 64 50 12 2 35 1.52
149674--149763 24 3.8 24 96 0 153 34 21 10 34 1.87
149697--149770 15 4.7 15 68 21 53 36 20 8 35 1.82
152114--152182 21 3.3 21 97 0 129 47 8 30 13 1.72
152114--152203 21 4.1 21 92 4 126 48 10 27 13 1.74
154460--154490 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!