NC_053902.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053902.1 Apocynum venetum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156596
Tables: 1
This is table 1 of 1 ( 55 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
250--701 226 2.0 226 100 0 904 30 22 11 36 1.89
4727--4991 130 2.0 130 99 0 521 45 14 11 28 1.80
5867--5981 56 2.1 56 96 0 212 40 20 10 29 1.85
6936--7625 345 2.0 345 99 0 1362 40 15 16 27 1.88
14195--14836 320 2.0 320 100 0 1284 35 12 12 38 1.81
27567--27603 17 2.2 17 100 0 74 24 16 0 59 1.37
27975--28068 37 2.6 37 91 5 149 44 7 13 34 1.72
28820--28875 27 2.1 27 96 3 105 39 12 32 16 1.85
29618--29772 70 2.2 70 94 2 269 32 14 14 39 1.86
31412--31567 75 2.1 74 97 1 294 27 19 19 33 1.96
32112--32441 165 2.0 165 100 0 660 29 16 17 36 1.92
32790--32852 2 33.5 2 75 12 53 49 3 3 44 1.34
32791--32852 11 5.9 11 79 9 67 50 3 3 43 1.34
32808--32858 26 1.9 27 84 4 68 47 1 5 45 1.38
32806--32858 28 1.9 27 84 3 70 47 1 5 45 1.37
32788--32859 13 5.5 13 73 6 56 45 2 5 45 1.41
32814--32868 28 2.0 28 82 7 67 41 1 9 47 1.46
33656--33845 90 2.1 90 97 1 357 52 10 15 22 1.73
36843--36990 76 2.0 74 95 2 269 29 27 18 23 1.98
38617--38641 12 2.1 12 100 0 50 16 48 16 20 1.82
44063--44240 89 2.0 89 98 0 347 29 18 16 35 1.93
44220--44256 19 1.9 19 88 0 56 21 2 2 72 1.09
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
44232--44264 12 2.8 12 100 0 66 24 0 0 75 0.80
46810--46839 15 2.0 15 93 0 51 60 3 20 16 1.50
46902--47091 96 2.0 94 96 2 353 31 17 15 35 1.92
47155--47307 75 2.0 75 100 0 306 20 25 9 44 1.81
49484--49803 156 2.1 156 98 0 622 33 16 23 26 1.96
50461--50564 47 2.2 47 94 5 185 31 15 6 46 1.72
50690--50850 79 2.0 79 96 0 295 32 18 16 32 1.93
52809--53033 113 2.0 113 100 0 450 31 16 9 42 1.80
54120--54149 15 2.0 15 100 0 60 33 6 6 53 1.53
61682--61922 119 2.0 118 98 1 466 31 17 16 34 1.93
67359--67801 221 2.0 221 100 0 886 33 13 18 33 1.90
67835--68209 187 2.0 187 100 0 750 35 10 17 36 1.84
70015--70046 16 1.9 17 93 6 57 28 12 6 53 1.62
70521--70561 21 2.0 21 90 0 64 31 26 7 34 1.84
82964--83083 58 2.1 57 93 4 208 33 10 17 39 1.83
84023--84530 253 2.0 253 100 0 1016 29 20 15 34 1.93
85120--85315 94 2.1 94 97 2 371 33 12 14 39 1.83
91495--91549 24 2.5 22 85 8 67 14 23 12 49 1.78
91513--91566 21 2.6 21 82 11 74 9 20 11 59 1.59
93933--94012 9 8.9 9 71 0 70 30 8 25 36 1.86
93933--94012 18 4.4 18 96 0 142 30 8 25 36 1.86
101876--101986 54 2.1 54 100 0 222 12 30 21 35 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
109872--109934 31 2.0 31 93 0 108 42 20 9 26 1.83
114964--115179 102 2.1 102 98 0 414 40 14 13 31 1.84
129324--129359 19 1.9 19 88 5 56 0 19 5 75 1.00
129868--130066 102 2.0 98 84 10 260 34 15 14 36 1.88
133186--133248 31 2.0 31 93 0 108 26 9 20 42 1.83
141254--141321 35 1.9 35 100 0 136 8 33 14 42 1.77
149081--149160 18 4.4 18 96 0 142 36 25 8 30 1.86
149081--149160 9 8.9 9 71 0 70 36 25 8 30 1.86
151527--151580 21 2.6 21 82 11 74 59 11 20 9 1.59
151509--151598 21 4.1 22 74 8 67 53 10 24 12 1.68
156524--156570 21 2.1 23 88 7 71 0 0 65 34 0.93
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Tables: 1
The End!