NC_054176.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_054176.1 Mucuna pruriens plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152119
Tables: 1
This is table 1 of 1 ( 48 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1986--2020 17 2.1 17 100 0 70 65 5 5 22 1.36
4598--4631 13 2.5 13 95 4 59 44 2 0 52 1.16
5009--5041 16 2.1 16 100 0 66 39 18 6 36 1.75
5054--5105 17 3.3 16 77 22 65 50 11 7 30 1.67
5076--5102 13 2.1 13 100 0 54 48 14 7 29 1.71
5254--5290 2 18.5 2 94 0 65 54 0 0 45 1.00
5318--5349 12 2.5 13 90 10 57 18 0 21 59 1.38
25397--25426 15 2.0 15 100 0 60 60 0 13 26 1.34
25704--25729 12 2.2 12 100 0 52 46 0 7 46 1.31
28693--28752 21 2.8 21 87 5 84 28 1 1 68 1.09
29592--29620 9 3.0 10 90 10 51 51 0 0 48 1.00
32890--32938 16 2.9 16 77 14 53 51 0 2 46 1.12
40435--40470 15 2.4 15 90 0 54 36 16 8 38 1.79
46914--46944 14 2.2 14 94 0 53 48 0 22 29 1.51
46949--46981 10 3.3 10 95 0 57 39 6 9 45 1.61
48832--48857 13 2.0 13 100 0 52 38 15 7 38 1.76
51671--51704 10 3.4 10 91 0 50 38 11 11 38 1.79
51848--51891 22 2.0 22 100 0 88 36 9 9 45 1.68
51854--51901 22 2.2 22 84 0 60 43 6 8 41 1.60
51884--51919 11 3.3 11 84 0 54 61 0 11 27 1.30
51938--51970 13 2.5 13 95 5 57 60 15 0 24 1.35
55492--55518 13 2.1 13 100 0 54 33 0 29 37 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63820--63845 12 2.2 12 100 0 52 61 7 7 23 1.49
64722--64767 24 1.9 24 95 0 83 26 17 21 34 1.95
64972--64999 12 2.3 12 100 0 56 50 7 14 28 1.69
66399--66440 21 2.0 21 100 0 84 66 9 0 23 1.21
68452--68483 16 2.0 16 93 0 55 31 12 3 53 1.54
68484--68524 12 3.6 12 80 12 59 51 4 9 34 1.56
68481--68524 22 2.0 22 100 0 88 50 4 9 36 1.55
78244--78285 21 2.0 21 100 0 84 38 9 0 52 1.34
81987--82031 21 2.1 21 100 0 90 55 8 8 26 1.60
82909--82944 17 2.1 18 94 5 65 44 0 0 55 0.99
83959--83994 14 2.6 14 95 0 54 50 0 16 33 1.46
88235--88286 21 2.5 21 83 0 77 9 23 9 57 1.60
89523--89564 21 2.0 21 100 0 84 33 9 23 33 1.87
90675--90712 18 2.1 18 95 0 67 34 5 23 36 1.78
90682--90721 9 4.4 9 80 0 53 35 7 27 30 1.84
108108--108155 25 1.9 25 95 0 87 58 12 12 16 1.63
111042--111098 12 4.8 12 84 0 60 45 8 14 31 1.75
111054--111100 24 2.0 24 91 0 76 42 10 10 36 1.74
111053--111100 12 4.0 12 86 0 69 41 12 10 35 1.77
123558--123592 12 2.9 12 100 0 70 34 14 0 51 1.42
127043--127090 25 1.9 25 95 0 87 16 12 12 58 1.63
144476--144515 9 4.4 9 80 0 53 30 27 7 35 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
144485--144522 18 2.1 18 95 0 67 36 23 5 34 1.78
145633--145674 21 2.0 21 100 0 84 28 28 4 38 1.77
146911--146962 21 2.5 21 83 0 77 57 9 23 9 1.60
151397--151430 14 2.4 14 100 0 68 35 14 0 50 1.44
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Tables: 1
The End!