NC_054306.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_054306.1 Nardostachys jatamansi chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155268
Tables: 1
This is table 1 of 1 ( 65 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
14391--14423 11 3.2 11 91 8 52 72 0 0 27 0.85
31651--31693 18 2.6 17 79 13 54 44 2 4 48 1.36
45371--45406 18 2.0 18 88 0 54 58 16 5 19 1.58
46313--46368 24 2.3 25 78 9 71 64 14 7 14 1.48
52652--52698 20 2.3 21 92 7 87 38 14 4 42 1.66
54862--54893 16 2.0 16 100 0 64 56 6 25 12 1.59
57769--57803 17 2.1 17 100 0 70 42 17 17 22 1.88
58377--58511 33 4.1 33 92 0 207 34 20 23 22 1.97
58709--58855 54 2.7 54 95 0 258 22 15 29 31 1.95
58707--58855 81 1.8 81 94 0 262 22 16 29 31 1.96
58709--58855 27 5.4 27 91 0 231 22 15 29 31 1.95
67647--67679 17 1.9 17 100 0 66 45 12 6 36 1.66
68591--68651 21 2.9 21 95 0 104 29 29 13 27 1.94
68840--69050 21 10.0 21 93 0 359 56 8 11 23 1.60
70762--70787 12 2.2 12 100 0 52 46 15 15 23 1.83
80961--81002 19 2.2 19 100 0 84 42 9 14 33 1.78
82098--82131 17 2.0 17 100 0 68 11 17 5 64 1.45
82133--82169 18 2.1 18 89 0 56 24 29 8 37 1.84
88536--88650 21 5.5 21 100 0 230 52 14 28 4 1.61
89759--89802 21 2.1 21 95 0 79 22 15 20 40 1.90
89854--89925 21 3.3 22 78 20 71 11 20 11 56 1.64
89872--89925 21 2.6 21 82 11 74 9 20 9 61 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91455--91507 27 2.0 27 96 0 97 33 18 16 30 1.94
91801--91830 15 2.0 15 93 0 51 56 0 30 13 1.37
91836--92005 18 9.4 18 88 2 243 17 5 54 22 1.63
91836--92005 54 3.1 54 92 1 270 17 5 54 22 1.63
92806--92884 15 5.3 15 85 0 86 34 2 37 25 1.70
94114--94160 24 2.0 24 86 0 67 23 6 44 25 1.77
94298--94341 21 2.1 21 100 0 88 47 0 25 27 1.52
110540--110578 18 2.2 18 100 0 78 20 33 0 46 1.51
110721--110850 25 5.0 25 80 10 145 52 13 13 20 1.74
110863--110917 25 2.2 26 96 3 103 50 14 12 21 1.76
110808--110988 67 2.7 67 98 1 346 49 13 13 23 1.78
110930--111034 25 4.0 26 80 14 110 53 13 14 19 1.73
110983--111042 23 2.6 23 89 0 93 58 11 13 16 1.63
110967--111025 30 2.0 29 87 9 84 57 10 15 16 1.64
111906--111948 21 2.1 21 91 4 70 72 2 23 2 1.08
113664--113709 21 2.2 21 88 0 65 71 8 8 10 1.30
114764--114803 18 2.2 18 86 0 53 42 12 7 37 1.71
114772--114808 18 2.1 18 100 0 74 40 16 5 37 1.71
115146--115182 18 2.1 18 94 0 65 59 16 8 16 1.59
116286--116340 18 3.1 18 100 0 110 40 16 10 32 1.83
126452--126477 13 2.0 13 100 0 52 38 7 23 30 1.83
129653--129772 60 2.0 60 100 0 240 26 20 13 40 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
130584--130626 21 2.1 20 91 4 68 2 23 2 72 1.08
131486--131549 23 2.9 21 82 15 76 15 12 12 59 1.61
131495--131549 23 2.4 23 93 0 92 18 14 10 56 1.67
131507--131565 30 2.0 29 87 9 84 16 15 10 57 1.64
131498--131602 25 4.0 27 81 13 98 19 14 13 53 1.73
131548--131811 25 11.0 25 72 16 211 21 13 13 50 1.76
131544--131791 67 3.9 67 87 11 378 22 13 14 50 1.77
131678--131787 55 2.0 55 92 0 184 20 13 15 50 1.77
131954--131992 18 2.2 18 100 0 78 46 0 33 20 1.51
148191--148234 21 2.1 21 100 0 88 27 25 0 47 1.52
148372--148418 24 2.0 24 86 0 67 25 44 6 23 1.77
149648--149726 15 5.3 15 85 0 86 25 37 2 34 1.70
150527--150696 18 9.4 18 88 2 243 22 54 5 17 1.63
150527--150696 54 3.1 54 92 1 270 22 54 5 17 1.63
150702--150731 15 2.0 15 93 0 51 13 30 0 56 1.37
151025--151077 27 2.0 27 96 0 97 30 16 18 33 1.94
151004--151066 33 1.9 33 86 0 90 31 15 17 34 1.92
152607--152660 21 2.6 21 82 11 74 61 9 20 9 1.54
152604--152678 24 3.4 23 74 22 63 56 10 20 13 1.66
152730--152773 21 2.1 21 95 0 79 40 20 15 22 1.90
153882--153996 21 5.5 21 100 0 230 4 28 14 52 1.61
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Tables: 1
The End!