NC_054349.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_054349.1 Lonicera fulvotomentosa voucher leaves chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155102
Tables: 1
This is table 1 of 1 ( 65 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
28908--28941 17 2.0 17 100 0 68 58 0 5 35 1.22
29445--29474 15 2.0 15 93 0 51 23 26 3 46 1.68
48311--48350 13 2.9 14 88 7 64 32 17 7 42 1.77
59625--59733 45 2.4 45 100 0 218 28 24 26 20 1.99
59984--60028 18 2.5 18 96 0 81 35 0 53 11 1.37
60058--60099 21 2.0 21 100 0 84 33 19 4 42 1.72
60396--60530 33 4.1 33 87 1 191 23 22 32 21 1.98
60396--60548 66 2.3 66 89 0 225 22 21 33 22 1.97
60396--60548 33 4.6 32 83 6 173 22 21 33 22 1.97
60544--60608 27 2.4 27 94 0 112 27 20 32 20 1.97
60592--60706 18 5.9 18 79 16 113 32 13 39 15 1.86
60565--60728 63 2.6 63 96 0 292 29 15 37 17 1.91
60691--60787 27 3.6 27 85 2 106 26 18 30 23 1.98
60920--61046 33 3.8 33 97 0 236 21 20 37 21 1.95
60928--61067 66 2.1 66 89 2 210 21 21 34 22 1.97
62782--62824 21 2.0 21 95 0 77 27 6 18 46 1.75
70414--70460 13 3.8 13 77 11 62 68 0 6 25 1.13
70418--70463 24 1.9 24 100 0 92 71 0 6 21 1.08
71131--71184 20 2.9 20 71 18 62 46 9 12 31 1.74
71134--71191 18 3.2 18 70 18 57 41 10 12 36 1.76
71763--71845 21 4.0 21 96 0 148 28 32 16 21 1.96
83412--83438 12 2.2 12 100 0 54 22 18 7 51 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
83978--84028 17 3.0 17 97 0 93 11 21 5 60 1.52
84554--84592 18 2.2 18 86 4 53 41 7 10 41 1.68
86022--86073 24 2.2 24 85 0 68 23 15 7 53 1.67
86869--86901 16 2.2 15 89 10 50 36 6 0 57 1.23
91404--91506 24 4.4 24 89 3 131 13 24 13 48 1.78
93042--93090 24 2.0 24 84 0 62 32 22 14 30 1.93
93357--93386 15 2.0 15 100 0 60 60 0 26 13 1.34
93388--93454 18 3.7 18 84 7 100 14 4 58 22 1.55
93388--93469 36 2.3 36 97 0 155 15 4 58 20 1.56
93388--93465 18 4.3 18 82 9 97 16 5 57 20 1.58
94228--94295 15 4.5 15 81 7 75 35 4 29 30 1.77
94224--94308 30 2.8 30 80 7 100 34 4 29 31 1.78
95605--95733 12 10.0 12 69 17 55 36 6 33 23 1.82
95629--95676 24 2.0 24 84 8 62 35 2 39 22 1.66
95705--95763 12 4.9 12 80 0 64 49 0 38 11 1.40
95612--95777 78 2.1 78 83 2 199 39 6 33 19 1.78
100018--100059 21 2.0 21 95 0 75 19 19 21 40 1.92
103397--103440 22 2.0 22 100 0 88 27 9 40 22 1.84
111783--111825 22 2.0 22 95 4 79 55 9 4 30 1.52
111837--111872 18 2.0 18 94 0 63 52 13 5 27 1.63
111840--111883 18 2.4 18 81 7 54 59 11 4 25 1.51
112176--112221 24 1.9 24 95 0 83 50 21 6 21 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115492--115533 20 2.0 20 86 13 59 33 14 2 50 1.56
127982--128028 24 2.0 24 91 0 76 10 17 14 57 1.65
128368--128393 12 2.2 12 100 0 52 7 38 0 53 1.30
129527--129587 30 2.0 30 93 0 104 31 16 16 36 1.91
131296--131331 17 2.1 17 89 0 54 36 2 2 58 1.27
131788--131833 24 1.9 24 95 0 83 21 6 21 50 1.71
132137--132172 18 2.0 18 94 0 63 27 5 13 52 1.63
132165--132222 22 2.3 27 86 13 81 34 5 8 51 1.55
140569--140612 22 2.0 22 100 0 88 22 40 9 27 1.84
143950--143991 21 2.0 21 95 0 75 40 21 19 19 1.92
148246--148304 12 4.9 12 80 0 64 11 38 0 49 1.40
148246--148304 24 2.5 24 86 5 84 11 38 0 49 1.40
148247--148403 24 6.2 24 71 14 66 20 34 5 39 1.76
148344--148380 12 3.1 12 96 0 65 21 43 0 35 1.53
149714--149781 15 4.5 15 86 0 82 30 29 4 35 1.77
149701--149785 30 2.8 30 80 7 100 31 29 4 34 1.78
150555--150621 18 3.7 18 84 7 100 22 58 4 14 1.55
150540--150621 36 2.3 36 97 0 155 20 58 4 15 1.56
150623--150652 15 2.0 15 100 0 60 13 26 0 60 1.34
150919--150967 24 2.0 24 84 0 62 30 14 22 32 1.93
152475--152605 24 5.7 24 82 7 139 50 12 24 12 1.75
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Tables: 1
The End!