NC_054350.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_054350.1 Lonicera hypoglauca voucher leaves chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154581
Tables: 1
This is table 1 of 1 ( 57 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29288--29317 15 2.0 15 93 0 51 23 26 3 46 1.68
30907--30934 13 2.2 13 100 0 56 60 0 7 32 1.24
33029--33080 7 7.4 7 77 16 54 65 0 7 26 1.20
33029--33097 21 3.4 21 84 7 90 68 0 7 24 1.15
33042--33094 7 7.6 7 78 16 56 71 0 3 24 1.02
48233--48272 13 2.9 14 88 7 64 32 17 7 42 1.77
59524--59668 45 3.2 45 96 0 272 29 22 26 21 1.99
59963--60023 18 3.4 18 93 0 104 39 0 49 11 1.39
60361--60510 33 4.5 33 99 0 291 21 21 36 20 1.95
62246--62288 21 2.0 21 90 0 68 30 6 16 46 1.73
63222--63251 14 2.1 14 100 0 60 66 13 6 13 1.43
69907--69953 13 3.8 13 77 11 62 68 0 6 25 1.13
69911--69956 24 1.9 24 100 0 92 71 0 6 21 1.08
70616--70669 20 2.9 20 71 18 62 46 9 12 31 1.74
70619--70676 18 3.2 18 70 18 57 41 10 12 36 1.76
71240--71343 21 5.0 21 97 0 181 28 32 16 22 1.95
83467--83500 17 2.0 17 94 0 59 11 20 5 61 1.50
83476--83509 17 2.0 17 88 0 50 14 17 5 61 1.52
84026--84064 18 2.2 18 86 4 53 41 7 10 41 1.68
85494--85545 24 2.2 24 85 0 68 23 15 7 53 1.67
86341--86373 16 2.2 15 89 10 50 36 6 0 57 1.23
90877--90979 24 4.4 24 89 3 131 13 24 13 48 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92515--92563 24 2.0 24 84 0 62 32 22 14 30 1.93
92830--92859 15 2.0 15 100 0 60 60 0 26 13 1.34
92861--92927 18 3.7 18 84 7 100 14 4 58 22 1.55
92861--92942 36 2.3 36 97 0 155 15 4 58 20 1.56
92861--92938 18 4.3 18 82 9 97 16 5 57 20 1.58
93701--93768 15 4.5 15 81 7 75 35 4 29 30 1.77
93697--93781 30 2.8 30 80 7 100 34 4 29 31 1.78
95078--95206 12 10.0 12 69 17 55 36 6 33 23 1.82
95102--95149 24 2.0 24 84 8 62 35 2 39 22 1.66
95178--95236 12 4.9 12 80 0 64 49 0 38 11 1.40
95085--95250 78 2.1 78 83 2 199 39 6 33 19 1.78
99491--99532 21 2.0 21 95 0 75 19 19 21 40 1.92
102869--102912 22 2.0 22 100 0 88 27 9 40 22 1.84
111256--111298 22 2.0 22 95 4 79 55 9 4 30 1.52
111314--111349 18 2.0 18 94 0 63 63 5 5 25 1.38
111308--111353 23 2.0 24 82 4 58 63 6 6 23 1.43
114973--115014 20 2.0 20 86 13 59 33 14 2 50 1.56
127459--127505 24 2.0 24 95 0 85 12 17 12 57 1.65
127845--127870 12 2.2 12 100 0 52 7 38 0 53 1.30
129004--129064 30 2.0 30 90 6 97 31 18 14 36 1.91
131612--131647 18 2.0 18 94 0 63 25 5 5 63 1.38
131663--131705 22 2.0 22 95 4 79 30 4 9 55 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
140049--140092 22 2.0 22 100 0 88 22 40 9 27 1.84
143429--143470 21 2.0 21 95 0 75 40 21 19 19 1.92
147725--147783 12 4.9 12 80 0 64 11 38 0 49 1.40
147725--147783 24 2.5 24 86 5 84 11 38 0 49 1.40
147726--147882 24 6.2 24 71 14 66 20 34 5 39 1.76
147823--147859 12 3.1 12 96 0 65 21 43 0 35 1.53
149193--149260 15 4.5 15 86 0 82 30 29 4 35 1.77
149180--149264 30 2.8 30 80 7 100 31 29 4 34 1.78
150034--150100 18 3.7 18 84 7 100 22 58 4 14 1.55
150019--150100 36 2.3 36 97 0 155 20 58 4 15 1.56
150102--150131 15 2.0 15 100 0 60 13 26 0 60 1.34
150398--150446 24 2.0 24 84 0 62 30 14 22 32 1.93
151954--152084 24 5.7 24 82 7 139 50 12 24 12 1.75
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Tables: 1
The End!