NC_056094.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056094.1 Toddalia asiatica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158434
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4726--4759 17 2.0 17 100 0 68 47 11 0 41 1.40
4760--4793 17 2.0 18 88 11 54 70 0 5 23 1.09
9451--9484 15 2.3 15 94 0 59 35 0 2 61 1.11
9452--9490 15 2.8 14 88 7 53 35 0 2 61 1.10
15003--15044 22 1.9 22 85 0 57 35 14 9 40 1.78
15357--15398 21 2.0 21 86 9 59 40 9 21 28 1.84
30354--30383 15 2.0 15 100 0 60 40 6 6 46 1.56
37955--37987 16 2.1 16 100 0 66 48 0 21 30 1.50
38748--38787 19 2.1 19 90 0 62 52 0 2 45 1.14
49369--49435 22 3.0 22 100 0 134 26 8 17 46 1.78
53493--53529 18 2.1 18 100 0 74 21 10 5 62 1.48
61431--61479 25 2.0 24 88 4 71 42 10 4 42 1.57
61860--61901 14 3.0 14 100 0 84 21 21 0 57 1.41
70478--70516 21 1.9 21 89 5 62 33 25 10 30 1.89
87285--87330 23 2.0 23 100 0 92 47 17 8 26 1.76
91463--91537 21 3.2 24 72 12 75 10 22 9 57 1.61
93905--93958 18 3.0 18 97 0 99 29 9 27 33 1.88
102233--102270 18 2.1 18 90 0 58 23 7 7 60 1.51
110381--110442 32 1.9 32 96 0 115 38 24 9 27 1.86
113141--113172 12 2.8 12 95 4 57 68 0 9 21 1.17
115557--115596 20 2.0 20 100 0 80 50 15 15 20 1.79
122074--122110 18 2.1 18 100 0 74 45 5 10 37 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
134125--134186 32 1.9 32 96 0 115 27 9 24 38 1.86
142297--142334 18 2.1 18 90 0 58 60 7 7 23 1.51
150609--150662 18 3.0 18 97 0 99 33 27 9 29 1.88
153030--153104 21 3.2 24 72 12 75 57 9 22 10 1.61
157237--157282 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!