NC_056243.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056243.1 Ligustrum lucidum voucher TAN-M.S. Vorontsova 2081 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162498
Tables: 1
This is table 1 of 1 ( 49 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
309--339 16 1.9 16 100 0 62 41 6 12 38 1.69
427--472 14 3.3 14 90 0 74 39 8 15 36 1.78
15882--16012 39 3.4 39 100 0 262 19 19 22 38 1.93
16222--16304 21 4.0 21 93 0 139 34 10 26 27 1.90
24674--24718 21 2.1 21 100 0 90 31 15 22 31 1.95
25829--25900 30 2.4 30 90 0 117 36 15 23 25 1.94
26949--27998 48 21.9 48 80 11 1029 29 22 18 29 1.97
27507--28045 153 3.6 153 90 4 880 30 20 19 29 1.97
28389--28430 21 2.0 21 100 0 84 42 19 4 33 1.72
28620--28669 11 4.6 11 85 11 68 56 14 2 28 1.49
29024--29073 25 2.0 25 100 0 100 32 24 12 32 1.91
39014--39052 19 2.0 20 90 5 62 53 7 15 23 1.67
49690--49725 18 2.0 18 100 0 72 66 0 11 22 1.22
55956--55995 20 2.0 20 100 0 80 10 15 10 65 1.48
56859--56885 12 2.2 12 100 0 54 33 7 14 44 1.73
59362--59394 17 1.9 17 93 0 57 57 6 0 36 1.23
71077--71116 19 2.1 19 90 0 62 35 7 12 45 1.70
80473--80500 14 2.0 14 100 0 56 35 7 14 42 1.73
89450--89504 19 3.0 19 84 5 78 40 3 10 45 1.57
91696--91798 33 3.1 33 100 0 206 23 17 27 32 1.97
91870--91924 24 2.5 22 85 8 67 14 23 12 49 1.78
91892--91959 21 3.2 21 77 8 75 11 22 8 57 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93862--93886 12 2.1 12 100 0 50 68 16 16 0 1.22
94353--94428 18 4.2 18 93 0 125 27 11 26 34 1.91
102223--102258 18 2.0 18 88 0 54 25 11 2 61 1.43
102249--102286 18 2.1 18 100 0 76 34 0 15 50 1.45
110223--110283 31 2.0 31 93 0 104 40 21 9 27 1.85
113690--113715 6 4.3 6 100 0 52 19 0 80 0 0.71
114017--114071 18 2.9 18 84 10 65 69 5 25 0 1.10
114037--114071 18 1.9 18 100 0 70 68 2 28 0 1.04
115766--115809 21 2.1 21 100 0 88 52 9 13 25 1.70
115769--115822 21 2.5 21 88 8 74 55 14 9 20 1.66
116370--116493 18 6.9 18 97 0 221 61 5 13 19 1.52
120907--120945 20 2.0 20 85 10 53 56 23 0 20 1.42
133546--133669 18 6.9 18 97 0 221 19 13 5 61 1.52
134230--134273 21 2.1 21 100 0 88 25 13 9 52 1.70
135968--136002 18 1.9 18 100 0 70 0 28 2 68 1.04
135968--136038 21 4.0 17 72 24 58 0 23 7 69 1.13
135974--136015 21 2.0 21 95 0 75 0 26 4 69 1.08
136324--136349 6 4.3 6 100 0 52 0 80 0 19 0.71
139756--139816 31 2.0 31 93 0 104 27 9 21 40 1.85
147753--147790 18 2.1 18 100 0 76 50 15 0 34 1.45
147781--147816 18 2.0 18 88 0 54 61 2 11 25 1.43
155611--155686 18 4.2 18 93 0 125 34 26 11 27 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
156153--156177 12 2.1 12 100 0 50 0 16 16 68 1.22
158080--158169 21 4.1 22 75 8 76 54 10 23 12 1.67
158241--158343 33 3.1 33 100 0 206 32 27 17 23 1.97
160535--160589 19 3.0 19 84 5 78 45 10 3 40 1.57
160557--160594 19 2.1 18 85 9 51 47 7 7 36 1.62
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!