NC_056352.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056352.1 Benincasa hispida chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156758
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6497--6541 18 2.5 19 78 10 58 37 6 2 53 1.40
9080--9144 16 3.9 16 78 7 67 44 4 7 43 1.53
9080--9143 18 3.8 18 78 12 55 45 4 7 42 1.54
10604--10639 12 3.0 12 92 8 56 41 0 5 52 1.24
10628--10661 17 2.0 17 100 0 68 47 0 11 41 1.40
11349--11391 8 5.2 8 78 15 52 37 2 0 60 1.10
11343--11391 17 2.9 17 91 8 75 34 4 0 61 1.15
29655--29690 17 2.1 17 89 0 54 44 2 13 38 1.59
29994--30040 18 2.7 18 83 3 60 42 21 8 27 1.81
33703--33739 18 2.1 18 89 0 56 43 5 5 45 1.49
38236--38287 13 3.8 13 73 14 50 36 17 15 30 1.91
48953--48994 11 3.9 11 75 6 50 35 0 0 64 0.94
48961--49002 21 2.0 21 100 0 84 42 0 0 57 0.99
61457--61490 12 3.0 12 91 8 54 61 8 0 29 1.26
91281--91336 24 2.5 24 85 8 73 14 17 14 53 1.73
91301--91369 21 3.3 21 81 2 77 11 21 8 57 1.60
93735--93791 18 3.2 18 94 0 105 31 5 28 35 1.79
93735--93791 9 6.3 9 72 0 51 31 5 28 35 1.79
109741--109806 32 2.1 32 97 0 123 40 24 9 25 1.84
113353--113442 21 4.3 21 91 0 126 42 18 7 31 1.79
113347--113432 42 2.0 42 93 0 145 40 19 8 31 1.81
114278--114305 12 2.3 12 100 0 56 85 0 7 7 0.73
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128980--129018 20 2.0 20 85 10 53 17 2 25 53 1.56
133481--133546 32 2.1 32 97 0 123 25 9 24 40 1.84
149496--149552 18 3.2 18 94 0 105 35 28 5 31 1.79
149496--149552 9 6.3 9 72 0 51 35 28 5 31 1.79
151935--151986 21 2.5 21 87 0 77 59 11 19 9 1.59
151950--152006 24 2.5 22 86 8 71 54 14 17 14 1.71
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Tables: 1
The End!