NC_056376.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056376.1 Stemona tuberosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154374
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5771--5806 18 2.0 18 100 0 72 22 22 5 50 1.70
7509--7533 12 2.1 12 100 0 50 68 0 0 32 0.90
13038--13089 14 4.1 14 72 23 60 46 11 5 36 1.64
13050--13097 23 2.1 23 100 0 96 47 8 4 39 1.53
26119--26148 15 2.0 15 100 0 60 20 20 0 60 1.37
26887--26926 2 21.0 2 85 10 57 55 0 0 45 0.99
26887--26926 17 2.4 17 95 0 71 55 0 0 45 0.99
26877--26928 15 3.6 14 87 10 70 55 0 1 42 1.10
28095--28178 2 45.0 2 76 13 72 40 0 0 59 0.97
28092--28189 9 10.1 10 75 20 50 39 0 0 60 0.97
28184--28210 13 2.1 13 100 0 54 70 0 0 29 0.88
28198--28257 18 3.4 18 70 21 63 58 1 1 38 1.18
28203--28271 35 2.0 35 100 0 138 57 1 2 37 1.22
30448--30480 17 2.1 16 88 11 50 60 9 6 24 1.49
34245--34289 15 3.1 14 81 9 54 20 2 0 77 0.87
35127--35156 15 1.9 16 93 6 53 50 0 0 50 1.00
35185--35209 12 2.1 12 100 0 50 44 16 8 32 1.76
35207--35253 23 2.0 23 100 0 94 31 21 25 21 1.98
45514--45547 11 3.2 11 91 4 52 58 0 0 41 0.98
45517--45560 11 4.0 12 85 11 51 52 0 0 47 1.00
46560--46589 12 2.5 12 100 0 60 33 0 0 66 0.92
55623--55647 12 2.1 12 100 0 50 44 16 0 40 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
55898--55943 23 2.0 23 100 0 92 56 4 8 30 1.49
65657--65685 14 2.1 14 100 0 58 44 6 6 41 1.58
66292--66331 14 2.8 14 92 3 62 40 5 2 52 1.37
66736--66763 13 2.2 13 100 0 56 46 14 7 32 1.71
66761--66832 2 37.5 2 89 8 96 56 0 0 43 0.99
70960--70998 18 2.2 18 100 0 78 48 10 0 41 1.37
78242--78289 24 2.0 24 91 0 78 29 33 12 25 1.92
87995--88084 21 4.1 21 91 4 126 12 26 11 50 1.73
90428--90501 15 4.7 15 68 21 53 33 8 21 36 1.83
90435--90509 24 3.1 24 98 0 141 33 9 24 33 1.87
116777--116819 17 2.5 17 85 11 52 79 2 9 9 1.03
116774--116820 18 2.5 19 83 13 62 78 4 8 8 1.07
118571--118602 15 2.1 16 94 5 57 40 18 0 40 1.51
119814--119849 14 2.5 14 95 4 63 44 0 0 55 0.99
124361--124402 21 2.0 21 100 0 84 42 14 4 38 1.66
124835--124859 12 2.1 12 100 0 50 24 32 0 44 1.54
124862--124887 13 2.0 13 100 0 52 46 0 15 38 1.46
146166--146245 24 3.3 23 89 6 115 32 25 8 33 1.86
146179--146252 15 4.7 15 68 21 53 36 21 8 33 1.83
148596--148685 21 4.1 21 91 4 126 50 11 26 12 1.73
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Tables: 1
The End!