NC_056985.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056985.1 Hordeum vulgare chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 136485
Tables: 1
This is table 1 of 1 ( 33 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6163--6194 11 2.9 11 100 0 64 37 0 18 43 1.51
14160--14194 15 2.3 15 95 0 61 45 8 20 25 1.79
14748--14876 68 1.9 68 82 3 161 30 13 24 31 1.94
25093--25133 21 2.0 21 100 0 82 26 29 14 29 1.95
25985--26014 15 2.0 15 100 0 60 33 33 13 20 1.91
27022--27090 21 3.3 21 72 8 68 44 18 26 10 1.81
27022--27120 21 4.6 21 71 12 65 45 17 23 14 1.84
27069--27147 27 3.0 27 73 12 85 49 16 16 17 1.80
27120--27190 21 3.4 21 84 3 90 47 18 21 12 1.81
27136--27300 75 2.2 75 84 6 219 45 14 26 13 1.82
35899--35947 22 2.2 22 88 0 80 16 16 14 53 1.74
36101--36131 12 2.6 12 100 0 62 9 12 0 77 0.99
41489--41530 14 3.0 14 100 0 84 42 0 21 35 1.53
46191--46221 15 2.1 15 100 0 62 74 6 0 19 1.03
51484--51509 12 2.2 12 100 0 52 23 0 19 57 1.40
57075--57139 21 3.0 21 95 4 112 27 4 44 23 1.73
57413--57459 23 2.0 23 100 0 94 40 17 4 38 1.69
57701--57725 13 1.9 13 100 0 50 32 36 0 32 1.58
58909--58940 16 2.0 16 100 0 64 56 6 12 25 1.59
58910--58948 16 2.4 16 91 0 60 56 7 10 25 1.59
65834--65979 21 7.0 21 83 3 150 38 24 6 30 1.80
65838--65979 63 2.3 63 81 0 167 38 24 6 30 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66275--66325 21 2.4 21 83 0 66 54 19 9 15 1.68
68564--68603 5 7.6 5 86 8 53 20 15 0 65 1.28
68564--68601 11 3.5 11 85 7 60 18 15 0 65 1.27
68561--68603 21 2.0 21 100 0 86 18 13 0 67 1.23
68597--68635 20 2.1 17 86 13 51 41 10 7 41 1.68
76390--76429 18 2.2 18 100 0 80 20 35 5 40 1.74
76663--76702 18 2.2 18 86 0 53 2 20 7 70 1.24
76673--76715 18 2.4 18 92 0 68 6 13 2 76 1.08
79898--79994 45 2.2 45 90 1 151 22 15 14 47 1.82
99986--100013 14 2.0 14 100 0 56 42 14 0 42 1.45
117249--117276 14 2.0 14 100 0 56 42 0 14 42 1.45
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Tables: 1
The End!