NC_057062.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057062.1 Lagotis brevituba chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152967
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
86--123 6 6.0 6 88 11 58 18 47 0 34 1.49
4764--4791 14 2.0 14 100 0 56 57 7 7 28 1.52
6639--6670 16 2.0 16 100 0 64 50 12 18 18 1.78
12690--12715 13 2.0 13 100 0 52 23 15 7 53 1.67
36436--36469 14 2.3 15 90 5 52 61 0 26 11 1.30
39884--39912 15 1.9 15 100 0 58 17 34 34 13 1.89
42131--42182 26 2.0 26 100 0 104 15 19 11 53 1.71
46692--46745 14 3.6 14 76 13 54 24 11 0 64 1.25
46695--46756 31 2.0 31 84 6 81 25 11 0 62 1.28
67775--67814 21 1.9 21 89 0 62 32 27 10 30 1.89
74680--74720 21 1.9 22 90 5 66 46 4 14 34 1.66
74814--74838 13 1.9 13 100 0 50 24 8 0 68 1.16
88523--88577 24 2.5 22 85 8 67 14 23 12 49 1.78
88545--88612 21 3.2 21 77 8 75 11 22 8 57 1.61
90926--91015 18 5.2 18 89 4 123 32 7 25 34 1.85
90926--91002 9 8.9 9 66 8 52 32 6 25 35 1.82
98641--98675 17 2.0 18 88 5 54 25 2 22 48 1.64
98947--98988 21 2.0 21 100 0 84 38 14 4 42 1.66
106610--106670 31 2.0 31 96 0 113 39 22 9 27 1.86
111044--111082 20 2.0 20 85 10 53 56 23 0 20 1.42
111796--111863 34 2.0 34 100 0 136 47 14 11 26 1.79
123058--123097 13 3.2 13 82 13 57 40 17 0 42 1.49
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
123058--123104 11 4.1 11 94 5 76 38 19 0 42 1.51
123067--123115 22 2.4 21 80 12 59 44 12 0 42 1.41
126249--126291 15 2.9 15 80 19 54 0 25 0 74 0.82
126260--126291 14 2.3 14 94 0 55 0 21 0 78 0.76
130038--130098 31 2.0 31 96 0 113 27 9 22 39 1.86
137720--137761 21 2.0 21 100 0 84 42 4 14 38 1.66
138033--138067 17 2.0 18 88 5 54 48 22 2 25 1.64
145693--145766 18 4.1 18 94 0 121 33 25 8 32 1.85
145694--145760 9 7.4 9 68 0 53 31 26 8 32 1.87
148096--148185 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!