NC_057188.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057188.1 Ferula sinkiangensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 166583
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4179--4246 21 3.2 21 77 8 75 11 22 8 57 1.61
5354--5397 15 2.9 15 93 0 70 27 34 13 25 1.93
6614--6751 18 7.7 18 98 0 240 28 7 30 34 1.84
14643--14677 17 2.1 17 100 0 70 28 11 0 60 1.32
28273--28338 32 2.1 32 97 0 123 40 24 9 25 1.84
28440--28475 13 2.8 13 95 0 63 8 30 8 52 1.61
39768--39792 12 2.1 12 100 0 50 48 0 8 44 1.32
52867--52902 13 2.8 13 95 0 63 52 8 30 8 1.61
53004--53069 32 2.1 32 97 0 123 25 9 24 40 1.84
66665--66699 17 2.1 17 100 0 70 60 0 11 28 1.32
74591--74728 18 7.7 18 98 0 240 34 30 7 28 1.84
75945--75988 15 2.9 15 93 0 70 25 13 34 27 1.93
77114--77167 21 2.6 21 82 11 74 59 11 20 9 1.59
77097--77166 21 3.4 19 72 16 59 57 8 22 11 1.61
86075--86121 24 2.0 24 91 0 76 31 17 25 25 1.97
90677--90707 15 2.1 15 93 0 53 38 9 6 45 1.63
97471--97511 21 2.0 21 95 0 73 34 9 26 29 1.88
97602--97647 24 1.9 24 90 0 74 36 6 4 52 1.47
101552--101602 25 2.0 25 100 0 102 31 7 23 37 1.83
103605--103631 14 1.9 14 100 0 54 37 7 14 40 1.74
118660--118691 16 2.0 16 100 0 64 25 12 6 56 1.59
120745--120778 2 18.0 2 88 11 54 52 0 0 47 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136310--136346 18 2.1 18 100 0 74 32 10 21 35 1.88
145395--145491 49 2.0 49 87 0 140 31 20 16 30 1.95
150642--150684 20 2.2 20 82 0 50 25 18 11 44 1.84
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Tables: 1
The End!