NC_057435.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057435.1 Polygonum cuspidatum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163183
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
411--443 13 2.6 13 95 4 59 51 12 6 30 1.63
6650--6676 14 1.9 14 100 0 54 37 7 0 55 1.28
6858--6899 12 3.4 12 81 15 50 40 4 11 42 1.63
7201--7226 13 2.0 13 100 0 52 46 15 23 15 1.83
7750--7777 12 2.3 12 100 0 56 60 7 7 25 1.48
9495--9535 20 2.0 21 95 4 75 58 9 7 24 1.55
9786--9814 14 2.1 14 100 0 58 44 6 0 48 1.29
9820--9862 17 2.4 17 88 7 59 48 2 11 37 1.52
14711--14754 22 2.0 22 100 0 88 45 18 0 36 1.49
30246--30270 12 2.1 12 100 0 50 24 8 8 60 1.52
33987--34039 25 2.1 25 100 0 106 37 7 18 35 1.80
34848--34883 17 2.1 18 89 5 56 41 2 0 55 1.14
44878--44909 16 2.0 16 100 0 64 62 6 18 12 1.50
48241--48292 15 3.6 14 82 12 61 42 1 5 50 1.37
48241--48287 13 3.6 13 83 11 53 42 2 4 51 1.33
48252--48297 17 2.7 18 83 6 60 41 0 8 50 1.33
49334--49367 16 2.1 16 94 0 59 35 2 5 55 1.39
49603--49638 16 2.2 16 100 0 72 63 0 11 25 1.27
51991--52018 14 2.0 14 100 0 56 35 14 0 50 1.43
54508--54535 14 2.0 14 100 0 56 42 14 7 35 1.73
61727--61765 20 2.0 20 90 10 62 53 10 0 35 1.35
90132--90161 15 2.0 15 93 0 51 23 10 13 53 1.69
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93582--93625 21 2.1 21 91 0 70 36 15 20 27 1.93
110983--111048 32 2.1 32 97 0 123 40 21 9 28 1.83
112646--112687 15 2.9 15 82 3 50 54 4 4 35 1.42
112673--112729 17 3.4 17 85 7 71 64 0 7 28 1.19
112707--112765 24 2.5 23 97 2 100 67 0 8 23 1.17
112653--112739 15 5.4 16 70 25 51 63 1 6 28 1.28
112787--112843 26 2.2 26 81 12 64 52 5 10 31 1.58
113537--113592 21 2.7 21 88 0 76 26 10 26 35 1.89
114619--114663 12 3.8 12 90 0 63 42 8 28 20 1.82
114619--114671 12 4.4 12 76 9 54 45 9 28 16 1.79
136426--136478 12 4.4 12 85 0 61 20 30 7 41 1.80
137497--137560 21 3.0 21 83 0 83 34 25 12 28 1.92
138245--138302 26 2.2 26 79 11 66 32 10 5 51 1.58
138324--138406 24 3.7 22 76 23 77 25 8 0 66 1.20
138327--138382 24 2.3 24 100 0 112 25 7 0 67 1.15
138351--138416 17 3.9 17 80 11 64 28 6 0 65 1.17
138408--138450 22 1.9 23 85 4 61 34 4 6 53 1.49
140041--140106 32 2.1 32 97 0 123 28 9 21 40 1.83
157464--157507 21 2.1 21 91 0 70 27 20 15 36 1.93
160928--160957 15 2.0 15 93 0 51 53 13 10 23 1.69
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!