NC_058305.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058305.1 Albizia julibrissin chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 175922
Tables: 1 2
This is table 1 of 2 ( 144 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1741--1768 14 2.0 14 100 0 56 35 14 14 35 1.86
4783--4882 5 17.2 6 77 17 54 32 3 0 65 1.08
4789--4932 63 2.4 61 80 15 165 32 4 0 63 1.14
4783--4882 3 34.3 3 67 23 54 32 3 0 65 1.08
4783--4935 17 10.1 16 71 20 89 32 4 0 63 1.15
7238--7311 36 2.0 39 86 7 109 52 5 1 40 1.33
7238--7307 11 5.9 11 72 21 61 51 5 1 41 1.34
7265--7305 13 3.4 13 83 16 61 53 7 0 39 1.29
8891--8941 13 4.2 13 87 9 72 54 9 5 29 1.56
8894--8943 23 2.0 25 88 11 77 60 8 6 26 1.48
9020--9068 8 6.4 8 86 9 75 42 10 0 46 1.37
9026--9075 22 2.3 22 100 0 100 46 8 0 46 1.32
9015--9080 30 2.2 30 86 5 89 46 7 0 45 1.31
9426--9469 16 2.8 16 92 0 70 47 0 0 52 1.00
9444--9489 24 2.0 23 82 4 56 45 0 0 54 0.99
9544--9599 19 2.8 20 75 19 62 57 10 3 28 1.49
9544--9599 23 2.6 22 83 10 73 57 10 3 28 1.49
9662--9702 13 3.3 13 76 13 50 41 2 4 51 1.36
9855--9904 10 4.6 11 87 9 68 58 0 10 32 1.31
11100--11145 23 2.0 23 100 0 92 43 0 21 34 1.53
11142--11179 20 1.9 20 88 0 58 52 5 5 36 1.47
14867--14898 16 2.0 16 100 0 64 25 31 0 43 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
14944--14986 18 2.4 17 85 14 52 32 9 0 58 1.30
15051--15104 21 2.5 21 93 3 90 50 3 3 42 1.38
15076--15133 15 3.7 15 86 8 80 56 5 3 34 1.38
15057--15132 37 2.1 37 85 5 100 53 5 3 36 1.42
31151--31186 18 2.0 18 94 0 63 41 8 0 50 1.33
31153--31190 18 2.2 17 86 9 51 42 7 0 50 1.31
31253--31282 15 2.0 15 100 0 60 66 0 6 26 1.16
31230--31324 17 5.7 17 70 18 51 57 3 3 35 1.30
31269--31352 34 2.4 36 84 13 106 57 2 2 38 1.25
31457--31491 14 2.5 14 95 0 61 48 0 11 40 1.39
35593--35619 12 2.2 12 100 0 54 33 14 7 44 1.73
40054--40090 18 2.1 18 100 0 74 16 10 5 67 1.38
40661--40699 20 1.9 20 85 15 53 71 7 0 20 1.10
40706--40757 11 4.9 11 77 17 65 51 9 11 26 1.68
40728--40757 12 2.6 12 94 5 53 60 6 10 23 1.52
40825--40933 24 4.6 25 74 17 92 49 2 8 39 1.47
40851--40922 22 3.3 22 83 12 96 47 2 8 41 1.48
40871--40934 28 2.2 29 78 15 71 50 1 9 39 1.44
40936--40981 15 3.1 15 96 0 83 63 0 10 26 1.27
40984--41024 15 2.7 15 92 0 64 29 2 0 68 1.03
41053--41093 19 2.2 19 86 8 57 53 4 0 41 1.22
41109--41152 18 2.5 17 92 7 79 31 11 9 47 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
41399--41424 13 2.0 13 100 0 52 38 0 7 53 1.30
41535--41571 17 2.2 17 100 0 74 27 5 8 59 1.48
47404--47470 22 3.1 22 87 8 86 67 5 1 25 1.22
47451--47475 12 2.1 12 100 0 50 68 8 8 16 1.38
47408--47458 3 17.0 3 76 15 52 68 3 0 27 1.07
51326--51367 22 1.9 22 85 0 57 35 9 7 47 1.64
51377--51410 17 2.0 17 94 0 59 26 14 0 58 1.36
51704--51788 28 3.0 28 94 0 152 32 7 18 41 1.78
52226--52263 20 1.9 20 94 0 67 21 13 18 47 1.82
55988--56032 22 2.0 22 95 0 81 62 0 6 31 1.21
56253--56301 19 2.5 19 83 9 55 46 16 4 32 1.65
56271--56309 20 2.0 19 85 5 51 51 15 5 28 1.64
56411--56439 14 2.1 14 100 0 58 34 0 6 58 1.25
56473--56542 13 5.5 13 75 14 65 74 0 5 20 1.02
56465--56542 4 18.5 4 75 12 59 73 0 6 20 1.05
56466--56542 26 3.0 27 79 11 90 74 0 6 19 1.04
56459--56542 30 2.6 33 76 16 95 72 1 5 20 1.12
62045--62113 20 3.7 19 76 17 74 30 1 1 66 1.09
62050--62149 22 4.8 21 69 15 73 33 1 3 63 1.17
62045--62093 26 1.9 25 88 12 73 30 2 2 65 1.15
62038--62102 24 2.6 25 72 22 64 27 3 1 67 1.14
63574--63723 18 8.7 18 85 8 213 42 14 22 22 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63647--63705 30 2.0 30 96 0 109 44 16 22 16 1.87
63587--63741 48 3.1 48 93 5 247 42 14 21 21 1.88
63970--64067 18 5.4 18 98 0 178 36 6 27 29 1.81
64739--64803 19 3.1 21 83 12 73 66 0 0 33 0.92
64722--64818 37 2.6 36 77 11 99 64 1 1 32 1.07
64741--64802 14 4.5 14 77 18 51 64 0 0 35 0.94
64801--64841 13 3.0 13 86 13 64 60 7 7 24 1.48
64796--64843 15 3.3 15 85 14 73 60 6 6 27 1.45
68515--68544 15 2.0 15 100 0 60 26 20 6 46 1.75
68891--68924 17 2.0 17 94 0 59 41 23 2 32 1.69
69048--69084 7 5.0 7 87 12 56 56 13 2 27 1.50
69047--69084 15 2.5 15 95 0 67 55 13 5 26 1.59
69269--69336 16 4.1 16 83 5 82 55 1 1 41 1.18
69272--69340 34 2.1 32 86 5 93 57 1 1 39 1.16
69478--69551 14 5.1 14 87 6 112 50 8 0 41 1.32
69469--69544 19 3.7 19 69 19 62 48 9 0 42 1.35
69465--69551 29 3.0 28 78 8 102 48 9 0 42 1.35
69463--69551 44 2.0 44 100 0 178 48 8 0 42 1.34
69478--69548 29 2.4 29 86 6 108 49 8 0 42 1.33
69563--69624 20 3.0 20 88 9 81 25 6 0 67 1.14
69586--69625 12 3.5 12 80 19 50 25 2 0 72 0.97
73853--73883 15 2.1 15 100 0 62 41 12 0 45 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
73842--73894 27 2.0 26 82 10 63 39 11 0 49 1.39
74326--74416 7 12.7 7 73 21 73 54 10 0 34 1.35
74344--74402 21 2.8 21 94 2 100 54 11 0 33 1.37
75569--75598 14 2.1 14 100 0 60 36 6 13 43 1.70
76510--76586 16 4.9 16 78 15 79 28 14 2 54 1.53
76595--76663 20 3.0 24 79 20 92 49 0 7 43 1.30
78040--78115 10 7.2 10 76 17 57 38 7 0 53 1.30
86364--86395 15 2.2 15 94 5 57 6 3 0 90 0.53
86820--86862 21 2.0 22 90 4 70 30 16 0 53 1.43
87554--87615 27 2.3 26 86 13 81 29 0 1 69 0.98
87569--87689 43 3.0 40 71 18 101 29 0 4 66 1.10
87605--87655 16 2.9 17 86 13 77 35 0 5 58 1.22
87583--87655 35 2.0 37 89 5 114 31 0 5 63 1.17
87601--87655 19 3.1 19 84 15 89 34 0 5 60 1.20
89197--89226 15 2.0 15 93 0 51 33 30 13 23 1.93
89783--89819 4 9.5 4 88 5 58 45 0 2 51 1.15
89778--89817 19 2.1 19 100 0 80 42 0 5 52 1.23
90814--90859 23 2.0 23 86 0 65 19 23 2 54 1.55
90873--90905 16 2.0 17 94 5 59 66 12 0 21 1.23
91010--91051 14 2.9 14 86 6 57 66 0 2 30 1.04
91004--91059 15 3.8 15 79 13 62 62 0 3 33 1.12
91019--91075 11 4.7 12 74 18 55 63 0 0 36 0.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
99879--99915 12 3.1 12 100 0 74 48 8 24 18 1.75
106256--106312 16 3.6 15 81 13 53 12 5 1 80 0.95
106256--106296 16 2.6 15 88 7 55 12 4 0 82 0.81
106813--106845 11 3.1 11 91 4 50 33 0 15 51 1.43
116594--116737 48 3.0 48 93 4 254 62 9 6 21 1.48
116594--116738 49 3.0 49 94 3 258 62 8 6 21 1.48
117315--117363 24 2.0 24 100 0 98 34 8 24 32 1.85
119656--119703 25 2.0 24 84 8 62 56 4 14 25 1.56
124629--124661 16 2.1 16 94 0 57 6 18 3 72 1.18
124910--124937 14 2.0 14 100 0 56 35 7 7 50 1.57
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Tables: 1 2