NC_058323.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058323.1 Callicarpa macrophylla chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154149
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
111--158 21 2.3 20 82 7 60 25 2 0 72 0.95
119--158 16 2.4 16 87 8 53 25 2 0 72 0.97
6514--6546 11 3.1 11 91 4 50 60 0 0 39 0.97
6932--6964 16 2.1 16 88 11 50 45 6 6 42 1.53
7035--7069 17 2.1 17 100 0 70 48 28 5 17 1.69
8793--8838 13 3.7 13 81 18 53 0 34 0 65 0.93
8796--8836 20 2.0 20 100 0 82 0 34 0 65 0.93
30981--31011 15 2.1 15 100 0 62 48 12 12 25 1.77
47569--47608 16 2.7 14 81 11 53 25 15 0 60 1.35
59894--59925 16 2.0 16 93 0 55 25 15 18 40 1.90
60969--61013 21 2.1 21 95 0 81 28 24 15 31 1.96
68995--69035 21 2.0 21 95 0 73 29 26 9 34 1.88
78783--78810 14 2.0 14 100 0 56 42 7 0 50 1.30
89709--89763 24 2.5 22 85 8 67 14 23 12 49 1.78
89731--89798 21 3.2 21 77 8 75 11 22 10 55 1.65
92121--92228 18 6.2 18 93 3 159 31 8 25 35 1.85
99940--99976 17 2.2 16 86 13 56 29 0 24 45 1.53
100735--100771 18 2.1 18 100 0 74 45 10 16 27 1.80
107927--107987 31 2.0 31 93 0 104 40 21 9 27 1.85
112266--112304 20 2.0 20 85 10 53 56 23 0 20 1.42
113831--113868 18 2.1 18 100 0 76 26 5 15 52 1.64
121401--121432 16 2.0 16 100 0 64 50 12 18 18 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
127125--127159 14 2.5 14 90 0 61 0 17 5 77 0.96
131071--131131 31 2.0 31 93 0 104 27 9 21 40 1.85
138287--138323 18 2.1 18 100 0 74 27 16 10 45 1.80
139082--139116 17 2.0 18 94 5 63 48 22 0 28 1.51
146830--146925 18 5.3 18 96 0 165 33 26 9 31 1.88
146830--146937 18 6.2 18 93 3 159 35 25 8 31 1.85
149278--149331 21 2.6 21 82 11 74 59 11 20 9 1.59
149260--149349 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!