NC_058535.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058535.1 Gentiana triflora clone Pall chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 149125
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
247--281 17 2.1 17 94 0 61 45 0 8 45 1.34
7475--7499 12 2.1 12 100 0 50 52 0 24 24 1.48
13893--13920 14 2.0 14 100 0 56 35 14 7 42 1.73
25665--25689 12 2.1 12 100 0 50 32 0 32 36 1.58
29307--29334 14 2.0 14 100 0 56 35 0 14 50 1.43
29852--29880 14 2.1 14 100 0 58 24 41 0 34 1.55
30089--30126 13 2.9 13 100 0 76 31 21 7 39 1.82
34969--34997 13 2.2 13 100 0 58 55 0 6 37 1.27
43994--44025 12 2.8 12 95 4 57 31 9 9 50 1.66
45010--45042 16 2.1 16 100 0 66 24 12 6 57 1.57
46513--46542 15 2.0 15 100 0 60 20 13 6 60 1.55
55112--55146 16 2.3 15 90 5 52 28 2 11 57 1.48
55452--55479 14 2.0 14 100 0 56 21 7 0 71 1.09
57115--57144 15 1.9 16 93 6 53 40 6 0 53 1.27
59637--59679 14 2.9 14 89 6 59 41 18 9 30 1.82
62786--62815 15 2.0 15 93 0 51 46 10 33 10 1.71
63635--63665 15 2.0 16 93 6 55 45 0 16 38 1.47
65249--65278 15 2.0 15 100 0 60 13 26 6 53 1.64
65755--65795 21 2.0 21 90 0 64 34 26 7 31 1.84
70133--70160 14 2.0 14 100 0 56 35 14 7 42 1.73
103976--104038 31 2.0 31 90 0 99 42 22 9 25 1.83
122472--122509 18 2.1 18 95 0 67 7 10 2 78 1.04
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
122815--122882 24 3.1 24 76 24 94 26 4 7 61 1.41
122822--122870 18 2.7 18 93 0 71 26 4 8 61 1.42
126404--126466 31 2.0 31 90 0 99 25 9 22 42 1.83
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Tables: 1
The End!