NC_058736.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058736.1 Ardisia japonica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155996
Tables: 1
This is table 1 of 1 ( 46 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
175--202 14 2.0 14 100 0 56 21 7 0 71 1.09
3537--3561 12 2.1 12 100 0 50 24 32 8 36 1.84
4630--4673 20 2.2 20 100 0 88 54 9 4 31 1.52
6575--6637 21 3.0 21 100 0 126 23 14 14 47 1.80
6686--6735 24 2.1 24 100 0 100 32 14 20 34 1.92
16948--16972 10 2.5 10 100 0 50 32 8 8 52 1.60
27791--27815 12 2.1 12 100 0 50 76 16 0 8 1.02
28030--28075 23 2.0 23 100 0 92 34 13 13 39 1.83
28246--28278 12 2.8 12 90 9 50 27 0 21 51 1.48
32135--32198 29 2.2 29 97 0 119 57 0 3 39 1.14
33009--33055 23 2.0 23 100 0 94 34 4 29 31 1.77
33663--33702 17 2.2 17 86 8 53 55 0 0 45 0.99
33675--33713 18 2.2 19 86 9 55 61 0 2 35 1.10
36777--36806 12 2.4 13 94 5 53 23 6 6 63 1.43
36776--36807 13 2.4 14 85 15 50 21 6 6 65 1.38
47602--47643 22 2.0 21 81 13 50 57 11 4 26 1.54
51010--51036 13 2.1 13 100 0 54 33 14 7 44 1.73
56271--56313 20 2.2 20 100 0 86 69 0 4 25 1.07
60730--60766 17 2.2 17 86 13 51 35 13 5 45 1.66
61179--61204 13 2.0 13 100 0 52 38 7 15 38 1.76
61188--61224 18 2.1 18 94 0 65 43 8 10 37 1.69
68049--68077 14 2.1 14 100 0 58 20 20 6 51 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
68135--68166 16 2.0 16 100 0 64 37 12 0 50 1.41
70537--70577 21 2.0 21 95 0 73 29 26 9 34 1.88
72169--72197 15 1.9 15 100 0 58 24 13 6 55 1.63
74433--74472 20 2.0 20 90 0 62 20 32 7 40 1.80
79818--79851 17 2.0 17 100 0 68 35 0 5 58 1.22
85406--85468 31 2.0 31 100 0 126 39 12 6 41 1.69
89121--89172 26 2.0 26 92 0 86 40 15 15 28 1.88
91758--91812 24 2.5 22 85 8 67 14 23 12 49 1.78
91780--91847 21 3.2 21 77 8 75 11 22 8 57 1.61
94186--94279 18 5.4 17 93 3 93 29 11 26 31 1.92
94197--94289 18 5.2 18 96 0 150 30 13 26 29 1.95
99043--99076 17 2.0 17 94 0 59 35 14 11 38 1.83
100886--100922 16 2.3 16 90 0 56 40 27 18 13 1.88
101593--101625 11 3.1 11 86 4 50 30 3 18 48 1.63
114022--114063 20 2.0 21 86 13 61 54 21 0 23 1.44
115088--115113 13 2.0 13 100 0 52 30 7 23 38 1.83
117407--117445 20 2.0 20 84 0 51 64 12 7 15 1.49
128311--128353 21 2.1 20 83 12 52 11 6 2 79 1.02
141975--142011 16 2.3 16 90 0 56 13 18 27 40 1.88
143821--143854 17 2.0 17 94 0 59 38 11 14 35 1.83
148621--148713 18 5.2 18 96 0 150 29 26 13 30 1.95
148631--148724 18 5.4 17 93 3 93 31 26 11 29 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151063--151152 21 4.1 22 75 8 76 54 10 23 12 1.67
153738--153789 26 2.0 26 92 0 86 28 15 15 40 1.88
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Tables: 1
The End!