NC_058889.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058889.1 Stachyurus chinensis voucher PE_CPG00774 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162649
Tables: 1
This is table 1 of 1 ( 79 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1--43 22 2.0 22 100 0 86 55 2 0 41 1.12
37--81 15 3.0 15 80 0 54 51 0 0 48 1.00
5056--5094 15 2.6 15 87 0 51 53 20 2 23 1.57
5069--5098 15 2.0 15 100 0 60 53 20 6 20 1.67
5091--5123 16 2.1 16 94 0 57 66 0 9 24 1.20
5737--5764 14 2.0 14 100 0 56 35 0 21 42 1.53
8839--8864 12 2.2 12 100 0 52 42 7 0 50 1.31
9177--9204 13 2.2 13 100 0 56 28 7 0 64 1.20
10520--10588 26 2.8 25 73 6 70 28 1 0 69 0.97
10532--10602 35 2.0 35 100 0 142 30 2 0 66 1.06
10599--10629 16 1.9 16 93 0 53 58 0 6 35 1.24
11037--11080 23 2.0 21 86 8 61 38 4 0 56 1.20
11079--11117 14 2.7 15 96 4 71 66 0 7 25 1.18
13889--13918 15 2.0 15 93 0 51 20 16 6 56 1.62
15577--15603 13 2.1 13 100 0 54 25 14 0 59 1.36
17684--17731 24 2.0 24 96 4 89 43 14 20 20 1.87
28998--29022 12 2.1 12 100 0 50 16 16 0 68 1.22
30099--30152 22 2.5 21 79 8 63 64 0 5 29 1.16
30176--30200 12 2.1 12 100 0 50 52 32 0 16 1.44
31786--31818 16 2.1 16 100 0 66 30 0 6 63 1.18
34771--34816 23 2.0 23 87 8 67 28 17 10 43 1.82
35124--35163 20 2.0 20 90 0 62 40 2 12 45 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
39919--39996 5 15.6 5 77 15 72 57 0 0 42 0.98
39909--39988 18 4.1 19 78 15 76 53 1 0 45 1.08
39919--39996 24 3.4 22 76 16 70 57 0 0 42 0.98
39955--39997 6 7.3 6 85 15 63 65 0 0 34 0.93
39939--39996 11 5.6 11 75 20 63 62 0 0 37 0.96
40229--40254 13 2.0 13 100 0 52 46 0 15 38 1.46
40339--40381 15 2.8 16 92 7 79 51 0 9 39 1.34
40341--40381 19 2.1 20 90 4 66 51 0 7 41 1.30
46199--46224 13 2.0 13 100 0 52 15 0 15 69 1.20
48891--48929 13 2.7 15 92 7 64 46 17 7 28 1.76
50362--50395 17 2.0 17 100 0 68 29 0 11 58 1.33
50364--50402 17 2.3 17 90 0 60 33 0 12 53 1.39
50388--50434 12 3.9 12 78 10 51 63 0 2 34 1.06
51037--51061 12 2.1 12 100 0 50 48 8 0 44 1.32
51050--51113 25 2.5 25 73 16 60 42 10 1 45 1.49
51146--51198 27 2.0 27 96 3 99 62 3 3 30 1.30
51364--51395 16 2.0 16 100 0 64 12 0 12 75 1.06
55621--55679 28 2.3 23 83 13 64 25 3 3 67 1.21
56155--56179 11 2.3 11 100 0 50 44 0 16 40 1.47
56587--56618 16 2.0 16 100 0 64 31 0 12 56 1.37
60332--60357 13 2.0 13 100 0 52 38 0 15 46 1.46
61993--62018 13 2.0 13 100 0 52 23 0 15 61 1.33
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62305--62333 10 3.0 10 95 5 51 68 10 0 20 1.18
64718--64743 13 2.0 13 100 0 52 76 0 7 15 0.99
66098--66124 13 2.1 13 100 0 54 48 14 7 29 1.71
67533--67575 23 1.9 22 85 4 59 23 16 11 48 1.78
69431--69468 19 2.0 19 100 0 76 47 10 5 36 1.61
73183--73216 17 1.9 18 94 5 61 41 8 5 44 1.60
74093--74129 19 1.9 19 94 0 65 43 10 5 40 1.63
74159--74200 22 1.9 22 90 0 66 38 4 0 57 1.20
74269--74307 21 1.9 21 89 5 62 33 25 7 33 1.84
77891--77917 11 2.5 11 100 0 54 62 0 0 37 0.95
83057--83085 15 1.9 15 100 0 58 27 13 3 55 1.55
85723--85770 24 2.0 24 87 0 69 29 31 14 25 1.95
95567--95655 21 4.1 21 81 5 81 13 22 10 53 1.69
95587--95655 21 3.3 21 83 2 86 13 23 8 55 1.65
98022--98134 18 6.3 18 81 6 131 30 9 25 33 1.88
98022--98134 36 3.1 36 84 2 156 30 9 25 33 1.88
98032--98134 54 1.9 54 95 0 188 30 10 26 33 1.90
106341--106378 18 2.1 18 95 0 67 23 7 5 63 1.42
114384--114449 32 2.1 32 91 0 105 39 24 9 27 1.85
119966--120010 24 2.0 23 82 8 56 57 11 4 26 1.52
130104--130143 20 2.0 20 100 0 80 40 0 10 50 1.36
131908--131935 14 2.0 14 100 0 56 42 0 28 28 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
132408--132473 21 3.0 23 86 8 100 57 0 3 39 1.14
132804--132848 20 2.2 20 100 0 90 55 0 4 40 1.20
136072--136139 24 2.8 24 100 0 136 42 4 0 52 1.21
136088--136166 14 6.0 14 72 20 55 41 5 0 53 1.23
136142--136185 19 2.4 19 96 3 81 36 9 0 54 1.32
136139--136206 33 2.1 33 88 5 102 41 7 1 50 1.39
136139--136166 14 2.0 14 100 0 56 42 7 0 50 1.30
136174--136212 19 2.1 19 100 0 78 38 5 5 51 1.46
138974--139039 32 2.1 32 91 0 105 27 9 24 39 1.85
147045--147082 18 2.1 18 95 0 67 63 5 7 23 1.42
155289--155401 18 6.3 18 87 0 163 33 25 9 30 1.88
155289--155405 54 2.2 54 90 0 189 34 25 9 30 1.88
157768--157836 21 3.3 21 83 2 86 55 8 23 13 1.65
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Tables: 1
The End!