NC_058892.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058892.1 Polygonum aviculare chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 163448
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9759--9795 18 2.1 18 100 0 74 72 5 10 10 1.25
29116--29141 12 2.2 12 100 0 52 30 0 15 53 1.42
32937--32966 14 2.1 14 100 0 60 26 23 0 50 1.50
33674--33703 14 2.1 14 100 0 60 43 13 0 43 1.43
35271--35295 12 2.1 12 100 0 50 24 8 0 68 1.16
35333--35365 3 11.0 3 87 12 50 36 0 0 63 0.95
35336--35370 11 3.3 11 88 8 54 40 0 0 60 0.97
35269--35401 35 3.7 35 74 13 96 39 4 1 54 1.30
35332--35374 14 3.3 13 90 6 61 41 0 0 58 0.98
45316--45357 21 2.0 21 100 0 84 57 4 9 28 1.51
49976--50006 16 1.9 16 93 0 53 74 3 6 16 1.16
54754--54781 14 2.0 14 100 0 56 42 14 7 35 1.73
57732--57769 14 2.6 14 88 12 51 44 0 0 55 0.99
60960--60984 12 2.1 12 100 0 50 44 8 16 32 1.76
70116--70149 9 3.8 9 85 14 52 26 0 20 52 1.46
70115--70150 18 2.0 18 100 0 72 27 0 22 50 1.50
70115--70163 18 2.7 18 87 6 55 28 2 18 51 1.58
90372--90401 15 2.0 15 93 0 51 23 10 13 53 1.69
90518--90568 25 2.0 25 100 0 102 47 3 15 33 1.64
93838--93881 21 2.1 21 91 0 70 36 15 20 27 1.93
94996--95136 66 2.2 60 83 10 192 24 11 30 33 1.91
111239--111304 32 2.1 32 94 0 114 40 22 9 27 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112914--113010 14 7.2 13 74 10 72 62 1 6 29 1.26
112946--113004 24 2.5 23 89 8 84 66 0 6 27 1.17
113035--113091 26 2.2 26 81 12 64 52 5 10 31 1.58
113785--113840 21 2.7 21 88 0 76 26 10 26 35 1.89
114064--114099 12 3.0 12 95 0 63 25 5 25 44 1.75
114076--114171 36 2.7 36 96 0 183 23 15 17 42 1.88
114088--114221 60 2.2 61 77 9 141 24 16 17 41 1.89
114148--114195 12 4.0 12 94 0 87 25 6 25 43 1.77
122132--122170 20 1.9 21 84 5 53 66 10 7 15 1.43
123324--123350 11 2.5 11 100 0 54 29 7 7 55 1.55
137373--137516 36 4.3 36 76 20 168 42 18 15 23 1.89
137397--137444 12 4.0 12 94 0 87 43 25 6 25 1.77
137493--137528 12 3.0 12 95 0 63 44 25 5 25 1.75
137752--137815 21 3.0 21 83 0 83 34 25 12 28 1.92
138500--138557 26 2.2 26 79 11 66 32 10 5 51 1.58
138588--138646 24 2.5 23 89 8 84 27 6 0 66 1.17
138585--138680 43 2.2 43 80 9 106 30 6 1 62 1.26
138598--138674 14 5.7 14 73 14 56 28 7 1 62 1.31
138648--138690 22 1.9 23 85 4 61 34 4 6 53 1.49
140288--140353 32 2.1 32 94 0 114 27 9 22 40 1.84
157711--157754 21 2.1 21 91 0 70 27 20 15 36 1.93
161024--161074 25 2.0 25 100 0 102 33 15 3 47 1.64
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
161191--161220 15 2.0 15 93 0 51 53 13 10 23 1.69
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Tables: 1
The End!