NC_059754.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059754.1 Juncus effusus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 170612
Tables: 1
This is table 1 of 1 ( 73 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
677--729 22 2.3 22 84 12 63 81 1 7 9 0.96
748--778 15 2.1 15 93 0 53 70 3 6 19 1.22
2442--2472 16 1.9 16 93 0 53 32 9 0 58 1.31
3843--3882 21 1.9 21 100 0 80 52 10 22 15 1.71
5809--5839 13 2.4 13 94 0 53 0 3 3 93 0.41
7376--7420 14 3.1 14 84 12 56 55 0 11 33 1.35
9168--9204 18 2.1 18 89 0 56 45 13 13 27 1.81
23870--23912 9 4.8 9 83 11 61 48 11 0 39 1.40
23867--23930 27 2.4 27 92 5 105 50 10 1 37 1.47
23867--23932 9 7.7 9 75 14 59 51 10 1 36 1.46
23906--23940 17 2.1 17 89 5 54 60 5 2 31 1.35
24610--24658 21 2.3 21 80 16 57 38 18 14 28 1.90
34675--34713 19 2.1 19 90 0 60 43 10 17 28 1.82
41334--41913 292 2.0 292 99 0 1142 31 15 23 29 1.95
46974--47022 22 2.2 22 92 0 80 42 0 10 46 1.37
47562--47824 87 3.0 87 97 0 490 43 14 11 30 1.81
47925--48115 84 2.3 84 93 1 330 27 21 21 29 1.99
48969--49002 16 2.1 16 100 0 68 47 11 8 32 1.71
51316--51357 21 2.0 21 100 0 84 47 19 14 19 1.82
60027--60429 48 8.4 48 95 0 671 44 11 28 14 1.81
60443--60584 75 1.9 75 81 5 171 45 15 18 20 1.85
60560--60672 39 2.9 39 86 5 156 42 15 24 17 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60654--60777 27 5.0 27 59 22 74 49 12 25 12 1.77
60629--60940 48 6.5 48 85 7 373 47 14 24 13 1.80
60025--60940 144 6.3 143 75 9 473 45 13 25 15 1.83
64239--64295 20 2.8 21 94 2 98 57 0 10 31 1.32
74812--74847 17 2.1 17 100 0 72 16 8 16 58 1.61
83580--83626 21 2.2 20 79 17 51 51 10 21 17 1.75
83593--83640 21 2.2 22 81 7 62 54 12 20 12 1.70
83638--83674 18 2.1 18 100 0 74 45 5 16 32 1.70
97882--97917 13 2.8 13 91 4 56 38 8 22 30 1.83
98326--98359 12 2.9 12 91 4 52 38 0 23 38 1.55
98690--98846 57 2.9 52 84 9 224 33 24 14 28 1.94
100380--101421 242 4.4 242 96 2 1891 37 14 20 28 1.92
101444--101539 48 2.0 48 95 0 174 41 8 25 25 1.83
101513--101544 16 2.1 16 94 5 57 46 6 25 21 1.74
103267--103444 59 3.0 59 97 0 329 21 28 25 23 1.99
112958--113000 21 2.0 21 95 0 77 32 16 18 32 1.93
112979--113265 53 5.4 52 93 5 381 38 14 16 31 1.88
112916--113804 74 11.9 74 70 17 597 37 14 16 31 1.89
112979--113265 106 2.7 106 98 0 547 38 14 16 31 1.88
112958--113360 159 2.6 148 86 9 592 37 15 16 31 1.90
113244--113423 21 8.0 21 76 12 162 35 16 17 31 1.92
113402--113582 53 3.4 53 100 0 362 37 14 17 30 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
113436--113572 25 5.2 25 61 22 66 37 13 18 31 1.89
113408--113547 28 5.2 28 61 22 84 37 15 17 29 1.91
113561--113603 21 2.0 21 100 0 86 34 13 18 32 1.90
112979--113360 106 3.7 105 91 3 532 37 15 16 30 1.89
112916--113814 370 2.4 373 87 7 1289 37 14 16 31 1.89
113635--113677 21 2.0 21 100 0 86 34 13 18 32 1.90
113709--113751 21 2.0 21 100 0 86 34 13 18 32 1.90
113704--113836 53 2.5 52 73 22 148 39 13 15 31 1.87
113778--113850 32 2.3 32 92 0 119 39 16 13 30 1.87
123557--123600 14 3.1 14 78 12 54 43 6 11 38 1.67
123899--123931 15 2.2 15 94 0 57 51 6 9 33 1.58
128625--128656 14 2.3 14 94 0 55 21 3 6 68 1.26
135399--135423 12 2.1 12 100 0 50 40 24 36 0 1.55
137746--137818 32 2.3 32 95 0 128 28 13 17 39 1.88
137845--137887 21 2.0 21 100 0 86 32 18 13 34 1.90
137760--137892 53 2.5 53 73 22 159 30 15 14 39 1.87
137792--138077 74 3.9 74 98 0 545 31 16 14 37 1.89
137919--137961 21 2.0 21 100 0 86 32 18 13 34 1.90
137993--138035 21 2.0 21 95 0 77 32 18 16 32 1.93
147549--147726 59 3.0 59 97 0 329 23 25 28 21 1.99
149449--149480 16 2.1 16 94 5 57 21 25 6 46 1.74
149454--149549 48 2.0 48 95 0 174 25 25 8 41 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
149673--150371 242 2.9 242 98 0 1344 27 20 14 38 1.91
151905--152061 57 2.9 52 84 9 224 28 14 24 33 1.94
152392--152425 12 2.9 12 91 4 52 38 23 0 38 1.55
152834--152869 13 2.8 13 91 4 56 30 22 8 38 1.83
167579--167615 18 2.1 18 100 0 74 32 16 5 45 1.70
167613--167660 21 2.2 22 81 7 62 12 20 12 54 1.70
167626--167668 21 2.0 21 86 9 59 16 23 11 48 1.78
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Tables: 1
The End!