NC_059865.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_059865.1 Nymphaea nouchali chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159978
Tables: 1
This is table 1 of 1 ( 48 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2039--2063 12 2.1 12 100 0 50 24 16 16 44 1.86
4841--4897 9 6.6 9 73 20 50 70 8 1 19 1.23
4868--4904 16 2.5 15 87 12 58 70 5 0 24 1.08
4902--4948 23 2.0 23 100 0 94 29 8 25 36 1.86
15402--15451 13 3.8 13 84 7 66 40 0 4 56 1.18
15773--15823 21 2.5 21 87 3 68 43 11 11 33 1.78
15785--15826 21 2.0 21 100 0 84 38 9 14 38 1.78
15777--15838 21 2.6 25 71 28 62 45 8 12 33 1.72
25069--25120 26 2.0 26 100 0 104 19 19 15 46 1.85
29220--29266 15 3.1 15 100 0 94 34 25 14 25 1.94
29272--29317 22 2.1 22 100 0 92 45 8 8 36 1.66
34478--34507 12 2.4 12 94 5 51 33 3 6 56 1.42
34577--34610 15 2.3 15 100 0 68 47 8 11 32 1.71
34874--34924 20 2.5 20 93 3 84 29 15 17 37 1.91
35585--35621 19 1.9 19 88 0 56 40 13 18 27 1.88
35741--35768 13 2.2 13 100 0 56 39 10 21 28 1.87
35755--35805 21 2.5 20 90 3 75 41 5 15 37 1.72
35794--35846 26 2.0 26 100 0 106 47 11 11 30 1.74
35802--35837 19 1.9 18 88 5 54 47 11 11 30 1.74
39995--40056 29 2.1 29 100 0 124 17 8 19 54 1.67
40050--40095 22 2.1 22 100 0 92 21 30 8 39 1.84
50330--50364 16 2.2 16 100 0 70 31 17 17 34 1.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
64198--64223 13 2.0 13 100 0 52 53 0 0 46 1.00
73752--73794 21 2.0 21 86 0 59 30 25 13 30 1.94
77048--77082 17 2.1 17 94 0 61 17 5 14 62 1.49
81040--81066 11 2.5 11 100 0 54 25 11 18 44 1.83
81211--81246 18 2.0 18 100 0 72 44 16 16 22 1.86
82076--82103 14 2.0 14 100 0 56 42 7 35 14 1.73
83553--83580 14 2.0 14 100 0 56 21 0 21 57 1.41
83638--83686 23 2.1 23 96 0 89 44 2 20 32 1.63
94749--94817 21 3.1 21 85 10 86 15 21 8 53 1.69
96282--96330 21 2.3 20 80 13 53 30 14 26 28 1.95
97084--97134 24 2.1 24 96 0 93 29 11 27 31 1.92
114726--114771 21 2.2 21 100 0 92 17 41 15 26 1.88
118134--118180 22 2.1 22 100 0 94 42 4 27 25 1.73
119004--119046 20 2.2 20 95 0 77 20 30 4 44 1.72
120399--120428 15 2.0 15 100 0 60 46 13 0 40 1.43
128282--128335 27 2.0 27 96 0 99 22 31 3 42 1.71
131119--131161 21 2.0 21 100 0 86 48 0 23 27 1.51
132657--132712 26 2.2 24 84 6 67 14 30 7 48 1.70
132821--132889 21 3.3 21 87 0 102 36 5 14 43 1.70
132873--132902 12 2.5 12 94 0 51 33 10 10 46 1.71
132831--132936 54 2.0 54 88 3 160 33 7 14 45 1.73
132885--132976 21 4.2 20 78 10 85 31 5 16 46 1.69
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
135209--135254 21 2.2 21 100 0 92 26 15 41 17 1.88
152846--152896 24 2.1 24 96 0 93 31 27 11 29 1.92
153650--153698 21 2.3 20 80 13 53 28 26 14 30 1.95
155163--155231 21 3.1 21 85 10 86 53 8 21 15 1.69
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Tables: 1
The End!