NC_060417.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_060417.1 Rhaponticum uniflorum chloroplast, complete sequence
Parameters: 2 7 7 80 10 50 500
Length: 152760
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8868--8900 16 2.1 16 100 0 66 51 0 24 24 1.48
11558--11634 26 2.9 26 84 1 100 37 10 15 36 1.82
11559--11639 27 3.0 27 85 1 110 37 11 14 37 1.82
22909--22961 26 2.0 26 100 0 106 49 3 15 32 1.62
24894--24918 12 2.1 12 100 0 50 60 8 8 24 1.52
25299--25345 24 2.0 24 83 8 60 46 0 36 17 1.48
29628--29682 27 2.0 27 100 0 110 56 3 7 32 1.44
31484--31516 16 2.1 16 100 0 66 12 30 6 51 1.63
51651--51680 15 2.0 15 93 0 51 36 16 13 33 1.88
54402--54433 16 2.0 16 100 0 64 43 25 0 31 1.55
56125--56167 21 2.0 21 86 0 59 30 9 32 27 1.88
56564--56603 19 2.1 19 100 0 80 20 30 5 45 1.72
58758--58805 20 2.3 21 92 7 89 45 4 4 45 1.41
58801--58825 13 1.9 13 100 0 50 68 0 0 32 0.90
59306--59365 30 2.0 30 100 0 120 50 13 16 20 1.78
67577--67617 21 2.0 21 95 0 73 31 24 9 34 1.88
74920--74954 17 2.1 17 100 0 70 71 11 0 17 1.14
82037--82062 13 2.0 13 100 0 52 23 0 15 61 1.33
90917--91012 18 5.4 17 88 5 95 27 9 27 36 1.87
90917--91012 36 2.7 36 83 0 120 27 9 27 36 1.87
106809--106870 32 1.9 32 93 0 106 41 22 8 27 1.82
108920--108952 12 2.8 12 95 0 57 33 24 9 33 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112372--112412 21 2.0 20 90 4 64 19 0 34 46 1.50
112629--112699 30 2.4 30 85 0 97 33 8 25 32 1.86
119193--119242 25 2.0 25 100 0 100 32 20 4 44 1.70
124686--124717 15 2.1 15 100 0 64 40 6 6 46 1.54
127486--127555 20 3.7 20 81 18 94 24 1 0 74 0.90
129579--129640 32 1.9 32 93 0 106 27 8 22 41 1.82
145437--145532 18 5.3 18 88 0 120 36 27 9 27 1.87
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Tables: 1
The End!