NC_060536.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_060536.1 Fibraurea recisa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161671
Tables: 1
This is table 1 of 1 ( 108 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
223--264 21 2.0 21 100 0 84 47 4 19 28 1.69
305--332 14 2.0 14 100 0 56 28 7 14 50 1.69
1995--2027 17 1.9 17 93 0 57 72 0 9 18 1.10
2167--2198 16 2.0 16 100 0 64 50 0 6 43 1.27
2183--2234 26 2.0 26 96 0 95 42 1 23 32 1.65
5689--5736 16 3.0 16 84 6 62 58 0 8 33 1.28
5674--5723 16 2.9 17 82 8 57 56 0 6 38 1.24
5825--5874 23 2.3 21 90 10 82 52 0 8 40 1.31
8348--8376 14 2.1 14 100 0 58 27 10 6 55 1.59
9514--9564 25 2.0 25 100 0 102 52 11 7 27 1.65
10774--10814 18 2.3 18 95 0 73 26 9 4 58 1.50
19138--19169 15 2.1 15 100 0 64 40 0 12 46 1.42
30940--31014 25 3.0 25 98 0 141 30 9 4 56 1.50
31238--31289 26 2.0 26 100 0 104 30 3 19 46 1.68
33132--33178 24 1.9 25 91 4 78 17 23 0 59 1.37
33121--33183 24 2.8 22 82 15 76 14 22 0 63 1.30
33793--33833 18 2.3 18 83 4 57 41 14 0 43 1.45
33873--33930 11 4.7 13 75 14 52 46 3 0 50 1.18
33940--33981 19 2.2 20 82 4 50 30 2 2 64 1.19
33999--34048 25 2.0 25 100 0 100 44 8 8 40 1.63
34240--34267 14 2.0 14 100 0 56 50 0 14 35 1.43
34549--34587 15 2.5 16 84 16 55 38 2 10 48 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
34865--34907 19 2.3 19 95 0 77 27 9 16 46 1.77
34861--34918 19 2.9 20 78 17 59 31 8 13 46 1.74
35743--35794 11 4.4 12 74 13 54 32 5 0 61 1.20
35739--35793 24 2.2 24 96 3 101 32 5 0 61 1.19
35750--35796 11 4.1 11 78 10 58 36 6 0 57 1.24
35811--35850 20 2.0 20 100 0 80 35 0 15 50 1.44
39764--39828 8 8.5 8 70 19 50 46 3 0 50 1.17
39764--39839 21 3.6 21 81 10 84 47 2 0 50 1.15
39769--39864 18 5.3 18 72 18 58 47 3 1 47 1.24
39806--39864 20 3.0 20 85 4 77 50 3 1 44 1.28
39813--39880 18 3.7 18 82 4 73 48 5 1 44 1.36
39877--39927 9 5.7 9 75 15 52 50 0 3 45 1.20
39877--39928 18 2.9 17 83 8 68 50 0 3 46 1.20
40050--40094 13 3.5 13 90 3 74 40 8 0 51 1.33
40575--40618 21 2.1 21 100 0 88 36 9 34 20 1.84
46273--46330 29 2.0 29 100 0 116 55 6 6 31 1.53
48681--48710 15 2.0 15 93 0 51 40 20 10 30 1.85
49096--49131 13 2.7 14 87 12 58 8 8 0 83 0.82
49379--49414 18 2.0 18 100 0 72 55 11 5 27 1.57
50902--50941 12 3.2 12 86 6 53 35 0 7 57 1.27
50901--50942 13 3.3 12 83 9 57 33 0 7 59 1.25
51072--51101 15 2.0 15 93 0 51 43 0 0 56 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52829--52868 20 2.0 20 95 0 71 37 10 7 45 1.66
52922--52955 17 2.0 17 94 0 59 47 0 26 26 1.53
52923--52962 17 2.5 16 88 8 55 47 0 30 22 1.52
54047--54072 13 2.0 13 100 0 52 46 0 7 46 1.31
55718--55798 9 8.7 9 74 8 72 17 11 0 71 1.13
55716--55803 6 14.0 6 72 8 68 18 11 0 70 1.16
55716--55801 37 2.3 38 94 6 149 17 11 0 70 1.15
55831--55880 15 3.3 15 77 8 57 22 4 2 72 1.12
55909--55953 13 3.8 13 72 27 55 46 6 8 37 1.61
55912--55955 21 2.1 21 100 0 88 47 4 9 38 1.56
55991--56042 19 2.7 19 88 11 79 36 1 0 61 1.07
55999--56042 20 2.3 20 88 7 65 34 2 0 63 1.07
56042--56100 15 3.7 17 89 8 81 55 5 0 38 1.22
56066--56109 22 1.9 24 86 9 65 59 2 0 38 1.10
56149--56182 11 3.0 11 86 4 50 26 8 2 61 1.40
56227--56254 14 2.0 14 100 0 56 42 14 7 35 1.73
58303--58331 14 2.1 14 100 0 58 51 27 13 6 1.66
65744--65776 16 2.1 16 100 0 66 42 6 0 51 1.26
71643--71671 14 2.1 14 100 0 58 34 0 20 44 1.52
73017--73207 2 101.5 2 67 11 100 53 4 0 41 1.20
73018--73195 23 7.5 23 76 16 150 54 3 0 41 1.19
73057--73206 52 2.7 54 92 7 250 55 4 0 40 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
73035--73182 75 1.9 76 88 8 221 55 4 0 40 1.19
73251--73316 18 3.4 18 75 15 69 57 0 6 36 1.23
73259--73325 13 5.2 12 74 15 62 56 0 7 35 1.27
73252--73321 20 3.5 20 74 14 72 57 0 7 35 1.26
73237--73326 40 2.3 40 94 1 155 60 0 8 31 1.28
73421--73460 18 2.2 19 95 4 73 62 0 5 32 1.17
73444--73472 13 2.1 14 93 6 51 55 0 6 37 1.27
73662--73715 27 2.0 27 96 0 99 44 16 3 35 1.66
76363--76388 13 2.0 13 100 0 52 23 15 23 38 1.92
78773--78807 14 2.5 14 95 0 61 17 5 14 62 1.49
84524--84555 16 2.0 16 100 0 64 31 6 31 31 1.82
86171--86219 24 2.0 24 96 0 89 24 32 12 30 1.92
89468--89501 17 2.0 17 94 0 59 50 0 20 29 1.49
90190--90222 15 2.3 14 94 5 57 21 51 0 27 1.48
93203--93232 15 2.0 15 93 0 51 43 13 30 13 1.82
93457--93504 24 2.0 24 95 0 87 31 8 27 33 1.86
95855--95911 21 2.7 21 97 0 105 10 24 14 50 1.73
98301--98352 18 3.1 18 86 8 74 30 5 25 38 1.79
99620--99659 15 2.7 15 100 0 80 37 10 35 17 1.83
105523--105559 15 2.3 17 86 9 51 10 2 10 75 1.14
115946--116068 2 63.0 2 69 22 66 42 5 0 52 1.25
115944--115987 9 4.7 9 82 17 54 40 11 0 47 1.39
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115941--115982 21 2.0 21 100 0 84 38 9 0 52 1.34
116328--116358 15 2.1 15 100 0 62 29 19 0 51 1.47
116340--116390 23 2.3 22 80 10 59 37 9 7 45 1.67
118689--118729 18 2.3 19 83 12 59 75 0 0 24 0.80
118703--118750 23 2.1 23 84 0 60 75 2 6 16 1.11
119498--119538 21 2.0 21 95 0 73 31 7 7 53 1.56
120147--120180 17 2.0 17 100 0 68 23 0 17 58 1.38
120228--120257 15 2.0 15 93 0 51 36 6 10 46 1.64
124483--124514 16 2.0 16 100 0 64 37 0 0 62 0.95
124929--124977 23 2.1 23 100 0 98 44 14 12 28 1.81
127794--127832 13 3.2 13 92 7 64 35 0 7 56 1.28
127799--127836 11 3.3 11 92 7 58 31 0 7 60 1.25
128009--128061 15 3.6 14 78 16 63 58 0 0 41 0.98
128010--128068 30 2.0 29 83 9 75 62 0 0 37 0.95
147184--147220 15 2.3 17 86 9 51 75 10 2 10 1.14
153084--153123 15 2.7 15 100 0 80 17 35 10 37 1.83
154391--154442 18 3.1 18 86 8 74 38 25 5 30 1.79
156832--156888 21 2.7 21 97 0 105 50 14 24 10 1.73
159239--159286 24 2.0 24 95 0 87 33 27 8 31 1.86
159511--159540 15 2.0 15 93 0 51 13 30 13 43 1.82
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Tables: 1
The End!