NC_060724.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_060724.1 Magnolia champaca chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160008
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6420--6450 15 2.1 15 100 0 62 41 19 12 25 1.87
9413--9463 15 3.6 15 84 15 81 7 17 0 74 1.05
9424--9466 12 3.3 12 82 17 59 6 18 0 74 1.04
9413--9466 27 2.0 27 100 0 108 7 18 0 74 1.05
14143--14187 21 2.1 21 84 8 56 17 4 4 73 1.17
14143--14187 22 2.1 21 87 4 63 17 4 4 73 1.17
22170--22211 21 2.0 21 100 0 84 23 19 4 52 1.65
44955--44996 21 2.0 21 100 0 84 57 0 19 23 1.41
49052--49082 15 2.0 16 93 6 55 38 3 6 51 1.44
50669--50708 20 2.0 20 100 0 80 40 20 15 25 1.90
62650--62685 15 2.3 16 90 4 56 50 8 2 38 1.47
67259--67294 17 2.1 17 100 0 72 66 5 5 22 1.34
71893--71936 21 2.1 21 91 8 72 29 25 13 31 1.94
73037--73085 15 3.3 15 74 20 50 57 0 16 26 1.40
83205--83253 24 2.0 24 92 0 80 28 36 12 22 1.90
90506--90536 15 2.1 15 100 0 62 19 32 0 48 1.49
92769--92857 21 4.1 21 91 5 126 13 24 10 51 1.71
95223--95279 24 2.4 24 100 0 114 33 8 24 33 1.86
113187--113252 18 3.4 18 70 25 62 36 12 21 30 1.90
118764--118795 16 2.0 16 100 0 64 43 6 18 31 1.75
132702--132776 18 4.2 18 98 0 141 22 12 16 49 1.78
134794--134859 18 3.4 18 70 25 62 30 21 12 36 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152767--152823 24 2.4 24 100 0 114 33 24 8 33 1.86
155189--155277 21 4.1 21 91 5 126 51 10 24 13 1.71
157510--157540 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!