NC_060733.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_060733.1 Geum aleppicum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156036
Tables: 1
This is table 1 of 1 ( 54 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1811--1850 10 3.9 10 87 6 62 57 5 0 37 1.21
1809--1852 13 3.1 14 83 9 54 54 6 0 38 1.27
6771--6818 23 2.1 23 88 0 69 31 20 14 33 1.93
7231--7268 15 2.7 14 84 11 51 36 2 2 57 1.26
7305--7342 9 4.2 9 80 12 51 55 0 0 44 0.99
7307--7368 22 3.0 22 80 15 53 53 1 0 45 1.10
8985--9035 25 2.0 26 92 3 86 19 13 15 50 1.77
9833--9889 23 2.4 23 88 2 78 45 15 14 24 1.83
10414--10470 27 2.1 28 96 3 107 38 17 7 36 1.77
10584--10633 17 2.9 17 88 8 66 36 0 0 64 0.94
10933--10972 14 2.9 14 92 0 71 52 5 17 25 1.64
15342--15376 17 2.1 17 94 0 61 45 0 0 54 0.99
29911--29942 16 2.0 16 93 0 55 37 21 12 28 1.90
30995--31031 14 2.5 15 91 8 67 35 0 13 51 1.41
32042--32085 19 2.4 19 80 3 54 43 2 11 43 1.53
37146--37183 16 2.4 16 91 8 60 50 0 0 50 1.00
43144--43176 11 3.0 11 100 0 66 27 18 9 45 1.79
47158--47188 12 2.5 13 94 5 55 48 0 9 41 1.36
47985--48034 20 2.5 20 93 0 82 34 0 22 44 1.53
49366--49412 11 4.2 11 74 15 51 36 14 6 42 1.72
49369--49425 11 5.0 12 76 18 50 33 12 5 49 1.63
52198--52228 15 2.1 15 100 0 62 41 0 19 38 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
55602--55634 15 2.1 16 88 5 50 33 18 0 48 1.48
57490--57527 19 2.0 19 100 0 76 42 10 21 26 1.85
57564--57597 16 2.1 17 88 5 52 52 0 8 38 1.33
57697--57724 12 2.3 12 100 0 56 35 7 17 39 1.78
60271--60317 11 4.4 11 78 13 53 48 0 2 48 1.13
60250--60318 20 3.3 20 80 15 61 47 2 1 47 1.25
63922--63953 16 2.0 16 100 0 64 31 6 6 56 1.49
65808--65847 20 2.0 20 100 0 80 65 5 10 20 1.42
66131--66165 15 2.3 15 95 0 61 45 11 0 42 1.40
66139--66188 17 3.1 17 88 5 68 40 8 6 46 1.58
67016--67056 21 2.0 21 100 0 82 41 9 4 43 1.59
68082--68129 17 2.4 22 67 29 52 31 4 6 58 1.42
68679--68717 21 1.9 21 94 5 71 33 23 10 33 1.88
71038--71062 12 2.1 12 100 0 50 24 16 0 60 1.36
73048--73082 16 2.3 15 90 5 52 51 5 8 34 1.56
75221--75256 18 2.0 18 100 0 72 38 5 16 38 1.72
82744--82786 21 2.0 21 100 0 86 25 13 9 51 1.71
85028--85055 13 2.2 13 100 0 56 25 0 7 67 1.15
88119--88167 24 2.0 24 100 0 98 30 8 24 36 1.85
90164--90246 21 3.7 23 75 18 77 13 24 8 54 1.66
90184--90235 21 2.5 21 90 0 86 9 21 9 59 1.57
108841--108902 32 1.9 32 93 0 106 38 22 11 27 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
111499--111526 14 2.0 14 100 0 56 28 0 0 71 0.86
111497--111535 20 2.0 20 84 0 51 33 0 0 66 0.92
111536--111573 10 3.8 10 82 10 51 71 13 0 15 1.16
119120--119171 26 2.0 26 88 0 77 38 13 0 48 1.43
121913--121952 17 2.3 19 79 16 50 55 0 0 45 0.99
122704--122731 14 2.0 14 100 0 56 50 0 0 50 1.00
132493--132554 32 1.9 32 93 0 106 27 11 22 38 1.88
151157--151231 21 3.4 21 83 5 78 56 9 21 13 1.65
151149--151231 24 3.7 23 75 18 77 54 8 24 13 1.66
153228--153276 24 2.0 24 100 0 98 36 24 8 30 1.85
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Tables: 1
The End!