NC_060792.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_060792.1 Erycibe obtusifolia voucher GD00202020110802 plastid, complete genome Parameters: 2 7 7 80 10 50 500 Length: 150333 Tables: 1 This is table 1 of 1 ( 68 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 4013--4080 14 5.1 14 82 10 88 35 22 14 27 1.93 4008--4057 25 2.0 24 96 3 91 30 28 14 28 1.95 4043--4086 14 3.1 14 93 0 70 36 15 20 27 1.93 6338--6376 15 2.6 16 84 12 55 30 5 7 56 1.49 8545--8593 14 3.2 16 80 13 68 42 12 2 42 1.53 9667--9701 18 2.0 18 88 5 54 22 2 0 74 0.95 32084--32153 17 4.1 17 100 0 140 60 11 5 22 1.52 32969--33002 17 2.0 17 94 0 59 29 14 5 50 1.67 33686--33737 17 3.1 17 94 0 95 48 9 17 25 1.77 36389--36422 15 2.3 15 100 0 68 47 11 0 41 1.40 43240--43272 16 2.1 16 94 0 57 30 36 3 30 1.73 47557--47591 17 2.1 17 100 0 70 40 11 0 48 1.39 48100--48124 12 2.1 12 100 0 50 52 8 16 24 1.70 48380--48410 14 2.2 14 100 0 62 35 6 0 58 1.24 50525--50566 21 2.0 21 100 0 84 28 33 4 33 1.78 53928--53968 21 2.0 21 100 0 82 19 4 7 68 1.32 58802--58896 18 5.8 18 71 22 93 38 38 0 22 1.54 58820--58908 13 6.1 13 70 23 61 38 40 0 21 1.53 58802--58908 31 3.5 31 100 0 214 38 40 0 21 1.54 60898--60947 25 2.0 25 100 0 100 40 0 4 56 1.18 60903--60947 13 3.5 13 78 6 56 44 0 4 51 1.21 61670--61714 21 2.1 21 100 0 90 26 26 15 31 1.96 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 62616--62649 17 2.0 17 100 0 68 35 17 11 35 1.87 68893--68917 12 2.1 12 100 0 50 52 8 8 32 1.60 70196--70257 21 3.0 21 95 0 106 29 27 8 35 1.85 71394--71436 18 2.5 17 84 3 50 67 2 13 16 1.33 73055--73095 17 2.7 14 80 20 55 43 12 0 43 1.41 73058--73093 17 2.1 17 100 0 72 47 11 0 41 1.39 74411--74453 19 2.2 20 91 4 70 18 6 27 46 1.75 87873--87919 13 3.8 13 86 10 55 44 6 2 46 1.40 87875--87919 17 2.7 17 89 3 65 46 4 2 46 1.35 87875--87919 19 2.4 19 85 10 58 46 4 2 46 1.35 87921--87972 10 5.7 10 72 19 51 40 0 23 36 1.55 87914--87968 18 3.1 18 100 0 110 40 0 21 38 1.54 87875--87919 2 22.0 2 82 13 56 46 4 2 46 1.35 88230--88279 26 1.9 26 88 8 75 64 12 10 14 1.51 88509--88550 21 2.0 21 95 0 75 30 14 21 33 1.93 89513--89608 18 5.3 18 62 18 56 30 11 25 33 1.91 89504--89648 36 4.0 36 99 0 281 31 11 24 32 1.91 90796--90856 24 2.5 24 89 0 95 11 32 9 45 1.73 91710--91921 69 3.1 69 100 0 424 30 20 14 34 1.92 92162--92214 27 2.0 26 88 3 79 33 13 28 24 1.93 93172--93211 18 2.2 18 90 0 62 35 7 22 35 1.82 93165--93251 42 2.2 38 88 11 124 33 10 24 32 1.89 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 100993--101027 15 2.3 15 95 0 61 37 0 17 45 1.48 109647--109684 19 2.1 19 95 5 69 28 5 5 60 1.40 109963--109992 15 2.0 15 100 0 60 26 13 26 33 1.93 110502--110735 30 8.0 30 93 5 417 66 6 6 19 1.38 111381--111416 18 2.0 18 100 0 72 38 16 11 33 1.84 112221--112452 15 15.5 15 99 0 455 52 20 13 13 1.74 112831--113111 30 9.6 30 84 4 394 54 14 16 14 1.71 112831--113111 57 4.8 60 90 2 394 54 14 16 14 1.71 112892--112991 27 3.6 27 73 7 110 51 16 16 17 1.78 112978--113087 15 7.3 15 64 11 64 55 12 17 14 1.69 112993--113102 15 7.3 15 64 11 64 58 12 18 10 1.63 113458--113482 12 2.1 12 100 0 50 60 16 16 8 1.58 115665--115811 18 8.2 18 98 0 285 57 10 10 21 1.62 115790--115859 24 2.9 24 91 2 113 58 7 15 18 1.59 115790--115855 12 5.4 12 69 8 53 56 7 16 19 1.64 127131--127191 18 3.3 18 73 8 68 32 16 6 44 1.73 128357--128393 17 2.2 16 90 4 56 27 8 10 54 1.63 131467--131502 18 2.0 18 100 0 72 33 11 16 38 1.84 132148--132381 30 8.0 30 93 5 417 19 6 6 66 1.38 132891--132920 15 2.0 15 100 0 60 33 26 13 26 1.93 133199--133236 19 2.1 19 95 5 69 60 5 5 28 1.40 141856--141890 15 2.3 15 95 0 61 45 17 0 37 1.48 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 149632--149718 42 2.2 38 88 11 124 32 24 10 33 1.89 149653--149718 18 3.0 24 70 25 81 33 24 9 33 1.87 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 The End!