NC_060841.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_060841.1 Peucedanum praeruptorum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 146930
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
14355--14387 13 2.5 13 100 0 66 30 12 9 48 1.71
20514--20610 49 2.0 49 89 0 149 29 17 20 31 1.96
27523--27549 14 1.9 14 100 0 54 40 0 7 51 1.30
44819--44860 21 2.0 21 100 0 84 52 14 14 19 1.75
46310--46367 11 5.0 11 84 12 80 39 6 0 53 1.28
46315--46380 13 5.3 13 85 7 84 42 6 1 50 1.36
46315--46359 2 23.5 2 86 8 58 42 4 0 53 1.21
59183--59218 18 2.1 17 94 5 63 36 5 0 58 1.22
59594--59622 14 2.1 14 100 0 58 34 0 13 51 1.42
61448--61474 14 1.9 14 100 0 54 40 14 7 37 1.74
65898--65924 11 2.5 11 100 0 54 44 0 0 55 0.99
66647--66678 17 1.9 16 93 6 55 0 31 0 68 0.90
66948--66972 12 2.1 12 100 0 50 48 0 0 52 1.00
67302--67350 24 2.0 24 92 0 80 46 8 4 40 1.52
67441--67481 21 2.0 21 90 0 64 26 26 12 34 1.92
73713--73749 19 1.9 19 94 0 65 54 13 8 24 1.66
87595--87633 18 2.2 18 100 0 78 61 0 15 23 1.33
87915--87982 21 3.2 21 77 8 75 11 22 8 57 1.61
89084--89142 15 3.9 15 93 0 91 27 32 13 27 1.94
90359--90424 18 3.7 18 97 0 114 28 7 27 36 1.84
90359--90423 9 7.2 9 73 0 58 29 7 27 35 1.85
92007--92061 27 2.0 27 100 0 110 29 21 14 34 1.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92201--92291 30 3.2 30 61 20 77 27 14 8 49 1.72
92195--92306 55 2.0 55 100 0 224 27 14 10 47 1.77
92676--92759 39 2.1 41 91 6 136 34 26 11 27 1.91
102490--102530 20 2.0 20 100 0 82 51 14 29 4 1.63
107158--107223 32 2.1 32 97 0 123 40 24 9 25 1.84
107530--107557 14 2.0 14 100 0 56 78 0 7 14 0.95
113533--113558 13 2.0 13 100 0 52 30 7 0 61 1.24
118557--118581 12 2.1 12 100 0 50 48 0 8 44 1.32
131441--131468 14 2.0 14 100 0 56 14 7 0 78 0.95
131775--131840 32 2.1 32 97 0 123 25 9 24 40 1.84
136468--136508 20 2.0 20 100 0 82 4 29 14 51 1.63
146239--146322 39 2.1 41 91 6 136 27 11 26 34 1.91
146692--146803 55 2.0 55 100 0 224 47 10 14 27 1.77
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Tables: 1
The End!