NC_061042.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_061042.1 Campsis grandiflora chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154293
Tables: 1
This is table 1 of 1 ( 58 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6313--6340 14 2.0 14 100 0 56 50 0 14 35 1.43
12397--12423 13 2.1 13 100 0 54 29 22 0 48 1.51
27404--27481 39 2.0 39 100 0 156 46 2 17 33 1.62
36400--36438 18 2.1 19 95 4 71 35 5 17 41 1.72
42067--42099 11 3.0 11 91 8 50 63 0 0 36 0.95
42067--42105 12 3.2 13 89 10 57 64 0 0 35 0.94
42065--42118 22 2.3 23 82 14 67 61 0 1 37 1.07
42055--42125 29 2.4 30 77 15 76 56 0 1 42 1.08
42433--42476 21 2.0 22 91 4 72 61 4 4 29 1.36
44585--44609 12 2.1 12 100 0 50 24 16 8 52 1.70
46510--46543 16 2.1 16 88 0 50 50 0 0 50 1.00
48567--48610 23 1.9 23 90 0 70 56 6 13 22 1.61
48624--48654 16 1.9 16 100 0 62 58 6 12 22 1.58
48627--48676 25 2.0 25 96 0 91 58 4 14 24 1.53
48699--48736 13 2.9 13 88 7 51 23 13 0 63 1.30
50236--50265 15 2.0 15 93 0 51 63 0 6 30 1.20
52137--52177 21 2.0 21 95 0 73 34 9 26 29 1.88
54086--54120 18 1.9 18 100 0 70 45 17 2 34 1.63
60403--60449 21 2.2 21 96 0 85 29 12 23 34 1.92
61026--61058 17 1.9 17 100 0 66 30 6 3 60 1.36
61957--62014 27 2.1 27 87 0 80 34 22 18 24 1.96
62048--62107 24 2.5 24 100 0 120 20 25 18 36 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62152--62178 12 2.2 12 100 0 54 51 7 7 33 1.58
62224--62268 23 1.9 24 81 4 56 31 17 22 28 1.97
62472--62545 21 3.5 21 84 0 94 25 24 10 39 1.88
62542--62907 15 24.4 15 90 0 480 32 16 9 42 1.79
62958--63046 21 4.2 21 78 2 81 28 30 7 33 1.85
62958--63046 42 2.1 42 82 0 106 28 30 7 33 1.85
63453--63703 126 2.0 126 96 0 466 25 19 11 42 1.86
80338--80393 24 2.3 24 100 0 112 33 26 14 25 1.94
87227--87264 19 2.0 19 100 0 76 52 10 0 36 1.36
87255--87285 16 1.9 16 100 0 62 64 6 3 25 1.33
89762--89809 24 2.1 22 84 7 60 14 20 10 54 1.70
92181--92274 24 3.8 24 80 8 116 31 6 29 31 1.83
92181--92282 51 2.0 51 92 0 168 31 7 29 31 1.86
93357--93430 33 2.2 33 92 0 121 32 18 39 9 1.83
100078--100123 23 2.0 23 91 0 74 23 8 6 60 1.49
100116--100150 17 2.0 18 88 5 54 28 0 20 51 1.47
108068--108128 31 2.0 31 93 0 104 40 21 9 27 1.85
110297--110338 21 2.0 21 100 0 84 33 9 14 42 1.78
110443--110494 21 2.5 21 100 0 104 46 3 42 7 1.51
114144--114207 6 10.7 6 79 0 65 64 6 29 0 1.18
114141--114207 18 3.7 18 93 0 107 62 7 29 0 1.22
114144--114193 24 2.1 24 96 0 91 66 6 28 0 1.15
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114296--114332 18 2.1 18 100 0 74 62 5 16 16 1.51
114298--114337 18 2.4 16 88 12 55 65 2 17 15 1.39
118332--118361 14 2.1 14 100 0 60 53 6 13 26 1.64
128878--128929 21 2.5 21 100 0 104 7 42 3 46 1.51
129034--129075 21 2.0 21 100 0 84 42 14 9 33 1.78
131244--131304 31 2.0 31 93 0 104 27 9 21 40 1.85
139222--139256 17 2.0 18 88 5 54 51 20 0 28 1.47
139249--139294 23 2.0 23 91 0 74 60 6 8 23 1.49
145942--146015 33 2.2 33 92 0 121 9 39 18 32 1.83
147098--147192 24 3.8 24 77 8 109 32 29 6 31 1.82
147090--147191 51 2.0 51 92 0 168 31 29 7 31 1.86
149521--149610 21 4.1 22 69 13 60 54 11 20 14 1.70
152087--152117 16 1.9 16 100 0 62 25 3 6 64 1.33
152108--152145 19 2.0 19 100 0 76 36 0 10 52 1.36
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Tables: 1
The End!