NC_061684.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_061684.1 Ligusticum chuanxiong cultivar Gansu chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 148564
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
293--317 12 2.1 12 100 0 50 0 28 16 56 1.41
461--496 18 2.0 18 100 0 72 11 11 22 55 1.66
10714--10755 18 2.3 18 91 0 66 45 7 9 38 1.64
21619--21715 49 2.0 49 89 0 149 29 17 20 31 1.96
28647--28675 14 2.1 14 100 0 58 34 0 6 58 1.25
32669--32698 14 2.1 14 100 0 60 36 6 40 16 1.75
38342--38379 19 2.0 19 100 0 76 36 10 21 31 1.87
48338--48385 13 3.8 13 83 10 64 39 8 2 50 1.44
48345--48372 11 2.5 11 100 0 56 39 7 0 53 1.28
48338--48385 24 2.0 24 91 0 78 39 8 2 50 1.44
48959--49026 23 3.0 23 79 8 61 36 4 0 58 1.18
53880--53923 22 2.0 22 100 0 88 40 9 18 31 1.81
63919--63945 14 1.9 14 100 0 54 40 14 7 37 1.74
69771--69820 24 2.1 24 92 0 82 48 8 4 40 1.51
69911--69951 21 2.0 21 90 0 64 26 26 12 34 1.92
76177--76213 19 1.9 19 88 0 56 56 10 8 24 1.60
83730--83763 14 2.4 14 90 5 50 38 2 2 55 1.30
90333--90400 21 3.2 21 77 8 75 11 22 8 57 1.61
91511--91554 15 2.9 15 93 0 70 27 34 13 25 1.93
92771--92944 18 9.7 18 98 0 330 28 9 28 33 1.89
108954--109019 32 2.1 32 97 0 123 40 24 9 25 1.84
115598--115627 13 2.3 13 100 0 60 33 0 13 53 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116286--116319 14 2.5 14 90 4 52 52 0 5 41 1.25
133557--133622 32 2.1 32 97 0 123 25 9 24 40 1.84
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Tables: 1
The End!