NC_061721.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_061721.1 Cissus quadrangularis voucher Wen#11985 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159948
Tables: 1
This is table 1 of 1 ( 51 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1512--1541 15 2.0 15 100 0 60 33 20 13 33 1.91
6071--6112 21 2.0 21 85 0 57 54 2 0 42 1.13
6155--6183 15 1.9 15 100 0 58 55 6 0 37 1.27
6326--6352 2 13.5 2 100 0 54 51 0 0 48 1.00
6392--6420 14 2.1 14 100 0 58 44 0 6 48 1.29
8285--8321 18 2.1 18 100 0 74 32 0 10 56 1.34
10331--10355 12 2.1 12 100 0 50 48 0 0 52 1.00
27625--27676 26 2.0 26 96 0 95 42 1 23 32 1.65
27733--27766 17 2.0 17 100 0 68 23 5 0 70 1.09
29485--29519 18 2.1 18 89 10 56 40 0 17 42 1.49
33596--33657 16 4.1 15 84 12 56 40 1 14 43 1.55
34059--34084 13 2.0 13 100 0 52 30 7 0 61 1.24
38296--38328 9 3.7 9 95 0 57 54 0 0 45 0.99
38288--38353 18 3.3 20 70 20 57 48 1 6 43 1.36
38288--38369 20 4.1 21 71 15 66 47 2 4 45 1.37
38358--38387 15 2.0 15 100 0 60 40 0 6 53 1.27
38407--38457 21 2.5 21 93 3 86 50 3 3 41 1.39
38572--38611 19 2.1 19 100 0 80 42 0 10 47 1.37
49535--49565 15 2.1 15 100 0 62 25 0 19 54 1.44
49537--49565 8 3.8 8 90 9 51 27 0 20 51 1.47
53630--53679 2 26.0 2 80 8 59 50 2 2 46 1.24
54457--54496 18 2.2 18 100 0 80 45 10 5 40 1.60
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62495--62530 17 2.1 17 94 0 63 44 2 16 36 1.63
67056--67098 21 2.0 21 100 0 86 32 4 4 58 1.39
67261--67285 13 1.9 13 100 0 50 48 0 16 36 1.46
67842--67874 15 2.2 15 100 0 66 27 12 0 60 1.32
70392--70421 15 2.0 15 93 0 51 53 10 3 33 1.51
70677--70710 14 2.5 14 95 4 61 44 11 0 44 1.40
70981--71023 9 5.2 9 78 21 58 65 9 0 25 1.22
70984--71024 14 3.1 13 86 13 57 68 7 0 24 1.15
70979--71024 23 2.0 23 100 0 92 65 8 0 26 1.21
72026--72066 21 2.0 21 95 0 73 29 26 9 34 1.88
75335--75369 17 2.1 17 100 0 70 40 17 0 42 1.49
75355--75391 2 19.0 2 88 5 58 48 2 0 48 1.15
76189--76221 15 2.3 15 89 5 50 24 18 6 51 1.68
93248--93336 21 4.1 21 81 5 90 12 23 10 53 1.68
95702--95774 18 4.1 18 98 0 119 28 10 27 32 1.91
95703--95766 9 7.1 9 70 0 56 29 7 28 34 1.85
95702--95774 36 2.0 36 97 0 137 28 10 27 32 1.91
103465--103516 4 12.5 4 78 8 50 19 5 0 75 1.01
103465--103516 17 3.1 17 84 13 56 19 5 0 75 1.01
103989--104026 18 2.1 18 100 0 76 26 5 5 63 1.37
118903--118956 17 3.2 17 100 0 108 59 0 11 29 1.32
127042--127071 15 2.0 15 100 0 60 26 6 20 46 1.75
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
129008--129069 32 1.9 32 96 0 115 51 8 11 29 1.66
144366--144403 18 2.1 18 100 0 76 63 5 5 26 1.37
144876--144927 17 3.1 17 81 13 56 75 0 5 19 1.01
144876--144927 4 12.5 4 78 8 50 75 0 5 19 1.01
152626--152689 9 7.1 9 70 0 56 34 28 7 29 1.85
152618--152690 18 4.1 18 98 0 137 32 27 10 28 1.91
155056--155144 21 4.1 21 81 5 90 53 10 23 12 1.68
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Tables: 1
The End!