NC_062347.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_062347.1 Crataegus laevigata isolate BBL-12518628 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159616
Tables: 1
This is table 1 of 1 ( 69 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1654--1686 16 2.1 16 100 0 66 33 6 6 54 1.50
5125--5153 15 1.9 15 100 0 58 55 6 0 37 1.27
5629--5674 23 2.0 23 100 0 92 52 8 8 30 1.62
6644--6686 20 2.2 20 100 0 86 55 9 4 30 1.52
7174--7223 15 3.4 15 77 2 57 32 0 8 60 1.26
7230--7262 16 2.1 16 94 0 57 51 3 6 39 1.42
7647--7685 14 2.8 14 92 0 60 58 2 0 38 1.12
8781--8811 15 2.1 15 93 0 53 51 9 12 25 1.70
10294--10324 16 1.9 16 100 0 62 48 6 0 45 1.28
10394--10462 24 2.6 25 77 15 68 43 1 8 46 1.43
10472--10503 16 2.0 16 100 0 64 50 6 0 43 1.27
10473--10512 16 2.4 16 91 4 62 52 5 0 42 1.23
13771--13804 17 2.0 17 100 0 68 41 11 17 29 1.85
21735--21764 15 2.0 15 93 0 51 36 13 16 33 1.88
21740--21769 15 2.0 15 93 0 51 33 13 23 30 1.93
28274--28300 13 2.1 13 100 0 54 40 0 22 37 1.54
30931--30979 20 2.5 20 96 0 89 44 12 0 42 1.41
33505--33533 14 2.1 14 100 0 58 20 31 6 41 1.79
33703--33738 9 3.8 10 92 7 58 50 0 0 50 1.00
33703--33740 19 2.1 18 90 5 58 47 0 0 52 1.00
34143--34215 16 4.4 16 81 11 85 56 0 0 43 0.99
34141--34197 20 3.0 20 78 21 61 57 0 0 42 0.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
38901--38938 15 2.5 15 95 0 67 60 5 0 34 1.19
38961--38999 12 3.2 12 92 3 60 30 0 0 69 0.89
48819--48872 20 2.8 20 91 8 87 44 0 7 48 1.31
49359--49393 18 2.0 18 88 5 54 40 8 11 40 1.72
49529--49568 11 3.7 11 86 6 64 30 12 0 57 1.36
49520--49569 21 2.4 21 96 0 91 28 12 0 60 1.32
49655--49732 29 2.6 29 85 8 93 34 6 2 56 1.39
49647--49707 29 2.1 29 100 0 122 29 11 3 55 1.51
49887--49934 24 2.0 24 100 0 96 25 0 12 62 1.30
52727--52758 16 2.0 16 100 0 64 18 12 12 56 1.67
54344--54400 2 28.0 2 82 3 60 56 3 0 40 1.17
54344--54407 8 8.5 8 75 17 57 57 3 0 39 1.14
54357--54407 12 4.5 12 88 11 81 60 0 0 39 0.97
54360--54407 22 2.2 21 96 3 87 62 0 0 37 0.95
54345--54413 14 4.7 14 78 8 50 56 4 1 37 1.28
54411--54447 13 3.0 13 84 7 51 13 10 0 75 1.04
57871--57900 14 2.1 14 93 0 51 20 13 10 56 1.65
59725--59749 12 2.1 12 100 0 50 60 0 8 32 1.26
61791--61825 17 2.1 17 94 0 61 45 2 11 40 1.55
66664--66694 16 1.9 16 100 0 62 41 0 6 51 1.27
68758--68793 18 2.1 17 94 5 63 38 5 8 47 1.57
69677--69720 22 2.0 22 100 0 88 54 9 4 31 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70501--70537 19 2.0 18 94 5 65 0 10 2 86 0.67
71320--71358 21 1.9 21 89 5 62 33 20 10 35 1.86
73234--73260 13 2.1 13 100 0 54 66 0 14 18 1.25
77814--77849 18 2.0 18 94 0 63 41 5 11 41 1.64
85818--85862 22 2.0 22 95 0 81 35 22 6 35 1.80
88390--88429 20 2.0 20 95 0 71 37 10 2 50 1.50
92594--92661 21 3.2 21 82 0 82 11 22 7 58 1.57
95016--95067 18 2.9 18 94 0 95 32 7 28 30 1.85
98020--98081 21 3.0 21 97 2 117 53 4 0 41 1.22
102528--102566 15 2.9 14 88 11 55 17 10 0 71 1.12
102570--102595 12 2.2 12 100 0 52 7 7 0 84 0.77
111308--111371 31 2.1 31 93 0 110 37 26 9 26 1.87
114717--114747 12 2.7 12 95 5 55 25 16 0 58 1.38
117560--117609 20 2.5 20 100 0 100 54 0 16 30 1.42
117557--117620 20 2.7 25 72 27 75 53 1 12 32 1.48
125268--125292 12 2.1 12 100 0 50 48 8 0 44 1.32
125407--125449 21 2.0 21 100 0 86 48 13 0 37 1.43
131888--131921 15 2.3 15 89 0 50 0 23 5 70 1.09
135901--135964 31 2.1 31 93 0 110 26 9 26 37 1.87
144677--144702 12 2.2 12 100 0 52 84 0 7 7 0.77
144706--144744 15 2.9 14 88 11 55 71 0 10 17 1.12
149191--149252 21 3.0 21 97 2 117 41 0 4 53 1.22
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152205--152256 18 2.9 18 94 0 95 30 28 7 32 1.85
154612--154700 21 4.1 21 81 5 81 56 7 23 12 1.62
158843--158882 20 2.0 20 95 0 71 50 2 10 37 1.50
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Tables: 1
The End!